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CTTGCACAAGGTGGCACTGCTGTAGGGACTGGATTGAACACAAAGAAAGGgtatgtgctgctttatggtttaagcaaatatgcttttcttttcccaatcatgctggtcccttttgaatgttttgttttggcactatttttaatttttgga...
species | Vitis vinifera |
transcript | Vv07s0005g00880.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTGCACAAGGTGGCACTGCTGTAGGGACTGGATTGAACACAAAGAAAGG GTTTGATGTAAAGATAGCTAGAGCAGTTGCCGAGGAAACAAATTTACCATTEST: gi|351045827|gb|FQ441012.1|FQ441012
genomic: CTTGCACAAGGTGGCACTGCTGTAGGGACTGGATTGAACACAAAGAAAGGgtatgtgctg ... cttcatttagGTTTGATGTAAAGATAGCTAGAGCAGTTGCCGAGGAAACAAATTTACCATT
EST: CTTGCACAAGGTGGCACTGCTGTAGGGACTGGATTGAACACAAAGAAAGG GTTTGATGTAAAGATAGCTAGAGCAGTTGCCGAGGAAACAAATTTACCATT
genomic: CTTGCACAAGGTGGCACTGCTGTAGGGACTGGATTGAACACAAAGAAAGGgtatgtgctg ... cttcatttagGTTTGATGTAAAGATAGCTAGAGCAGTTGCCGAGGAAACAAATTTACCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCACAAGGTGGCACTGCTGTAGGGACTGGATTGAACACAAAGAAAGGgtatgtgctgctttatggtttaagcaaatatgcttttcttttcccaatcatgctggtcccttttgaatgttttgttttggcactatttttaatttttgga
- - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa