Sequence
atgc intronic sequence ATGC exonic sequenceGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAGgtaagtttgtgatggtttatttattttttaatttttggcagttgttatcatcgtcatcagggttgagatctagataatctttcagtgatctcatgattca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G40050.1 (Glycine max), 5'ss of exon 9
GTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAGgta--------------agtttgtgatggtt--tatttat-tttttaatttt----tggcagttgttatcatcgtca---tcagggttgagatctagataatctttcagtgatctcatgattca------------------------------------------------------------------
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ACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGgtatcctataattaagaaatcattaaggactagcattcatgttttttatcctgtaatgccaggagtccacatatttagagtagaactcgggattgaaatactttgtgaattttatagtaatacacctatatttcatcccatgagggaaatttaatatatcatgactcatagttcttttttgaggatgcag
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G37450.1 (Glycine max), 5'ss of exon 11
GTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAGgta--------------agtttgtgatggt--ttatttattttttaattttt--------ggcagttgttatcatcgtca---------tcagggttgagatctagataatctttcagtgat---ctcatgattca---------------------------------------------------
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ACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATAAAGgtatcctataattaagaaatcaataaggactatcattcgtgtttttttttttcctgtaatgccatgagtccacatatttaaagtagaactcaggattgaaatactttgaagtttatagtaatatacctatatttcatcctatgagggaaattagacatatcatagttctgcttttttgacgatgcag
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G02260.2 (Arabidopsis thaliana), 5'ss of exon 9
GTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAGgta-agtttgtgatggtttatttattttt----taatttttg-gcagttgttatcatcgtcatcagggttgagatctagataatctttcagtgatctcatgattca--------------------------------------------------------------------
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TCCAGCATTGCAGGGGAGACTTTGCAGGTCTTTGCTCCTTTAGCAAAATTATTGGGAATGTATTCAATAAAGgtataaccctttaagtattatttttgcttgctataattcttatggaaatattaactaggtggccattatttccggttacatcagtcgaaatgtatgttagtgtgcatgtgaaactgaattatttcaatcgttgtgtccaatggcgttctgagttttgtggtggtaatcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352772776|gb|FQ473814.1|FQ473814EST: TGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG TCTGAACTTGAAAATCTATCCTTCATGTACACCAATGCTCAAGATTATGCT
genomic: TGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAGgtaagtttgt ... catgttgcagTCTGAACTTGAAAATCTATCCTTCATGTACACCAATGCTCAAGATTATGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAGgtaagtttgtgatggtttatttattttttaatttttggcagttgttatcatcgtcatcagggttgagatctagataatctttcagtgatctcatgattca
- - - - - - - - - - - - - - - - - CTCCTC