Sequence
atgc intronic sequence ATGC exonic sequenceATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatgcggacaattttttttattagaagaaggaacaacaattaattcagacatcaataaaaagtataaggatgagtatccttcaagtgtgcaaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 9
ATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatgcggaca-attttttttattagaagaaggaacaacaattaattcagacatcaataaaaagtataaggatgagtatccttcaagtgtgcaaac
|||||| |||||||||||||||||||| || || |||||||| || || || || || ||||| ||||| || |||||||||| |||||||| || ||| || | || |||| | |||| | || || | | | | | | | |
ATGGGTCTTCCACTTTGCTCATCTCCGCCAACTTCCTGTTTTGGTCCCTTATATTCCTACAGAAAATCCTCAGCTGAGTGATACTGCATATGAGgt--gtggtgctaacttgtaagttccattactaattttaacacctatctgttgtaatactattctgattttcttgtgtag---------------------
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 9
ATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatgcggacaattttttttattagaagaaggaacaacaattaattcagacatcaataaaaagtataaggatgagtatccttcaagtgtgcaaac----------
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| || || ||| | |||||||||||||| |||||| | | | | |||| | | | | || | | | || | ||| || | | |||| | | ||| | |||
ATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaaacaa-agttttctctgtcacaattatgtgtttgtgtagtatctg----taatgaactgacttgggataaaaaatcttttatgctgcttttggttctacag
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 9
ATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatgcggacaattttttttattagaagaaggaacaacaattaattcagacatcaataaaaagtataaggatgagtatccttcaagtgtgcaaac----------
|||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || || || || ||| | |||||||||||||| |||||| | | | | | || | | | | || | ||| | | ||| || | | |||| | | || | |||
ATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACTGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaaacaa-agtgttctctgtcacaattaatgtgtttgcttagtat---ctgtaatgaactgacttgggataaaaaatattttatgctgcttttggttctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719571|gb|FC069391.1|FC069391EST: AGAGAACCCAAGATTGCGTGATACTGCTTATGAG GTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTG
genomic: AGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatg ... tttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatgcggacaattttttttattagaagaaggaacaacaattaattcagacatcaataaaaagtataaggatgagtatccttcaagtgtgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagga