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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattattctgactacagtcctattgacctctctcgtcacacacctaaatctgaaacagagaaattcagttctagttctattttccatcaaatctcag

Basic information

species Vitis vinifera
transcript Vv06s0004g07380.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G06500.1 (Glycine max), 5'ss of exon 9
GTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattat-tattctgactacagtcctatt----gacctctctcgtcacacacct-aaatctgaaacagagaaattcagttctagttctattttccatcaaatctcag
|| ||||| || |||| |||||||||||||||||||||||| |||||||| || || || || || || ||| |||| || ||||||||| ||  ||| |  | |   ||    ||     |      ||   |   |  | | |   ||||  ||| |  | |  |  |      ||||||  |||       
GTTACTTCACCTGTTCAATGGGAAACAACAGTGAAGACTCTTCTAACCAAGGGTCTGAAGAAAAGCTATGAACTGGGACCCGGAAAGgtaataaatatacaaatttaggtttggtttgggaaaaaaaatcaataagtattttatagaagaaaatgagtaggtaaagtgaataaaagttttcctacaa-------

upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G29490.1 (Glycine max), 5'ss of exon 9
GTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattat-tattctgactacagtcctatt----gacctctctcgtcacacacctaaatctgaaacagagaaattcagttctagttctattttccatcaaatctcag
|| || || || |||| |||||||||||||||| ||||||| |||||||| || || || || || || ||| | || || ||||||||| ||  ||| |  | |   || |  ||     |      ||   |  ||  | |      || |   | |   |     | |   | ||| | |   |      
GTTACCTCACCTGTTCAATGGGAAACAACAGTGCAGACTCTTCTAACCAAGGGTCTGAAGAAAAGCTATGAACTCGGACCCGGAAAGgtaataaatatacaaatttaggttcagtttggaaataaaattcaataagcattttatagaagaaaatgaataggtaaagtgaataaaacttttcctacca------

upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G30200.2 (Arabidopsis thaliana), 5'ss of exon 9
-------------GTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattattctgactacagtcctattgacctctctcgtcacacacctaaatctgaaacagagaaattcagttctagttctattttccatcaaatctcag
             ||||| || ||||| | |||||| |||||||| ||||||||| || |||||||||| ||||  || ||||||||||| |||||||||||||| ||       |||   || ||         ||| | | | |   |  | |             | |||| |   | |  |  |  |||||   |||
ATGTTGACTACAGGTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtattttt-------ctatcttcgtaaa-------ctcattatagatggaggtttcttcttcttcttctaagttgtgtgttttgtggcattcaaacaccag

upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G30200.1 (Arabidopsis thaliana), 5'ss of exon 9
GTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattattctgactacagtcctattgacctctctcgtcacacacctaaatctgaaacagagaaattcagttctagttctattttccatcaaatctcag
||||| || ||||| | |||||| |||||||| ||||||||| || |||||||||| ||||  || ||||||||||| |||||||||||||| ||       |||   || ||         ||| | | | |   |  | |             | |||| |   | |  |  |  |||||   |||
GTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtattttt-------ctatcttcgtaaa-------ctcattatagatggaggtttcttcttcttcttctaagttgtgtgttttgtggcattcaaacaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361598|gb|EC925084.1|EC925084
EST:     CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG                         GTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAAT
genomic: CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattat ... caaatctcagGTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAAT
EST: gi|110687429|gb|EE064834.1|EE064834
EST:     CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG                         GTTATCGCTGGCATTTTCAAGAGA-TGGACAAAACTGCCGACTTANAGAAT
genomic: CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattat ... caaatctcagGTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAAT