1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGCGTGATGTGAAACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaacttgtttgtcatttttctcttccacatacaattttttctccttgaaatcaaaatattggacatcctgctaggaaaatccctttcttttttc...
species | Vitis vinifera |
transcript | Vv06s0004g04940.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|30302294|gb|CB979088.1|CB979088
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|30330590|gb|CD013852.1|CD013852
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|110390056|gb|EC954941.1|EC954941
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCGTGATGTGAAACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaacttgtttgtcatttttctcttccacatacaattttttctccttgaaatcaaaatattggacatcctgctaggaaaatccctttcttttttc
- - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc