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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact...

Basic information

species Vitis vinifera
transcript Vv06s0004g04390.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 8
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
| || || ||||| || ||||||||||| ||||| ||  | ||||| ||||||||||| |||||||| || || ||||| ||||| ||  | |||||   |    || | | |||      | | |||  |   | | |    | | || ||  || ||    | ||| ||||  | || |  |  || |    
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACGgtaatgctcgctgaacttctt------tcaacattctctcaggttg---tgtccagttggtcctgga--gcttattttcatacataat-tttacag----

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
| || || ||||| || ||||||||||| ||||| ||  | ||||| ||||||||||| |||||||| || || ||||| ||||| ||  | |||||   |    || | | |||      | | |||  |   | | |    | | || ||  || ||    | ||| ||||  |                  
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTgttagtaacttcattgctcaggccgtacggtaatgctcgctgaacttctt------tcaacattctctcaggttg---tgtccagttggtcctgga--gcttattttcata------------------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagt---ccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
|||| || ||||| || ||||||||||| ||||||||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||  | |||||   | || |  | |     |||  |  |  |||  |     || ||  |||  |   |||||    |||    ||| |  |                   
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatag-attggcggctaatc----ttttcacaatctttag------------------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 8
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagt---ccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
|||| || ||||| || ||||||||||| ||||||||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||  | |||||   | || |  | |     |||  |  |  |||  |     || ||  |||  |   |||||    |||    ||| |  |                   
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatag-attggcggctaatc----ttttcacaatctttag------------------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 15
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagt---ccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
|||| || ||||| || ||||||||||| ||||||||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||  | |||||   | || |  | |     |||  |  |  |||  |     || || ||||  |   |||||    |||    ||| |  |                   
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagata-tattggcggctaatc----ttttcacaatctttag------------------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcattt----aatcatgctttgtttaatttccaagatgacatccactgaact
|||| || ||||| || ||||| ||||| ||||||||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||  | |||||   | || |  | |   |     || ||  | | | | |||||||      || |        |  ||||    ||| |  |                   
AAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtat-----tttattttctct-tgagctactgcagatatattggcggctaatcttttcacaatctttag------------------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
|||| || ||||| || ||||||||||| ||||| ||  | ||||| ||||| ||||| |||||||| ||||| ||||| ||||| ||  | |||||   | |  || | || |||| |  |  ||  |  |     |   || |||   |   | ||  |||  | |  ||  |                   
AAATCCGAATTGCCAGGATTTTCAACACCTATGGACCAAGGATGAACATTGACGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgcttgttgaattctttagtttct--tcccagcttctgccagatagttttggtggctaatattttcatgatcttgtag------------------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact-----
|||||||  |||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||     | | | | |  | || |  |  |  ||| ||        || | | ||||   | ||| |||||| || |   | ||||       |||        
AAATACGTGTTGCAAGAATCTTTAACACATATGGGCCGCGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGgtaa---ttaaagcatttttcagtttgtagtt-tatatgctgtactgtagtgttatttctacgtgccttgtttgatctgtta-atgatggtttttgattgccaca

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 10
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact-
||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||  | |||   |  |   | | | |    |||  |   | | |  || ||   | ||   ||  ||  | |  |        |||   |||      | 
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGgtaattacttgactgttatctggttttaatgcatgctataatgttgttacttctgtatatctat-tttgatattctgatggttttgattgccagaaggatc

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagat-gacatccactgaact
||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||||||| |||||||  |||||            | | | |   | ||   || |||  ||  |   |||  | |  |||| | | || || |   |  | |  || |||   
AAATACGCATTGCGAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATTGCTCAAGCAATTCGgtaaatcctttaacttaataatgttataggcaagatggatatgctgataaata-gttttttaagactttatattatctcaactctcaagaaacattgatgc

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||  | |||   |  |   | | |      |||  |   | | |  || ||     |     |  | | | || | |    | |    |   | |||  
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 8
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagct----actattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||||||| |||||||  |||||      |     | | | |   | ||   || |||    | || |||  |   |   |   |   | || |  |||||  ||||  |   |   
AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCGgtaattcctttaactttataatgttataggcaagatggatatgctgataaataattttttaagactttatatatctcaactctcaaga-aacattgatgta---

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact-----
|||||||  |||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||     | |   | |  | || |  |  |  ||| |||       || | | ||||     ||| |||||| || |   | ||||       |||        
AAATACGTGTTGCAAGAATCTTTAACACATATGGGCCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCGATTCGgtaa---ttaaaacatttttcagtttgtagtt-tatatgttgtactgtagtgttatttctatgtgccttgtttgatctgtta-atgatggtttttgattgctgca

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 8
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatca-tgctttgtttaatttccaagatgacatccactgaact
|||| |||||||||||||| |||||||||||||| || || ||||| || |||||||| |||||||| ||||| ||||| ||||||||||| |||||           |||| |||||| |   |||  ||  |      | | |||  ||| |||  ||||| | |   ||||||   | | ||    || |  
AAATCCGCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTGTGAGCAACTTCATTGCTCAAGCACTCCGgtaa----------agtcattagctctc--tcaacttcattgaaaccaagttttgtttcatctctgcttagctgtgtttcca---ttaaatgtgttgtag-

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 8
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctacta-ttttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
|||| |||||||||||||| |||||||| ||||| || |||||||| || |||||||| |||||||| ||||| ||||| || |||||||| ||||  | |  | ||    |   | |    || || |||| ||   | | |  | | | ||| ||||   |||||  |||       | |     ||| |   
AAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGgtgagcctctttg----ctcaatccaacgaacaaattt-tattttccgagctataaattactcatctcttgtt--attgttcttgtcatgaatacttag--

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgta-----tgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcat------gctttgtttaatttccaagatgacatccactgaact-------------------------------
| |||||||| || || || |||||||||||||| || || ||||| ||||||||||| || ||||| ||||| ||||| ||||| || ||  |||        ||   ||  ||| |||     || ||| | ||| |    |  | | || |   |||           ||||  |    ||| |||  |  || |  |   |                               
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttga--atttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 9
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
|||| ||  | ||  ||||||| ||||| |||||||| ||||||||||| || ||||| || || ||||||||||| || ||||||||| |  ||||            |||   |    || |  || |   |||  || |    |||      ||   ||    | || | |  |     |           
AAATCCGTGTAGCACGAATTTTTAACACCTATGGGCCTCGCATGAATATCGACGATGGGCGAGTAGTCAGCAATTTTATTGCTCAAGCATTAAGgtactggtcctcaaggtctcaaa--attcaatatttccttaacttaatgaactcaa-----cacatttgacatgatgtacgggtgtgtag----------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ17446 (Selaginella moellendorffii), 5'ss of exon 8
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtc-cttatgtagtccttagc-tgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact
| ||| | || ||| | ||||||||||| || |||||||| |||||||| || |||||||| || || ||||| ||||| || ||||| ||  ||||||   | |  | | |   |  | || ||   |   |||  ||                                                         
AGATAAGGATCGCTCGCATTTTCAACACTTACGGGCCCCGGATGAATATCGACGATGGACGGGTCGTTAGCAACTTCATTGCCCAAGCTCTAAGgtatgctgcatgcgaaatggatgtcctgctgtataatcttgacag---------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71885522|gb|DT034577.1|DT034577
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
EST: gi|33407209|gb|CF212836.1|CF212836
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
EST: gi|71888765|gb|DT037820.1|DT037820
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
EST: gi|30297461|gb|CB974255.1|CB974255
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         -GAGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCT
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTG-GTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCT
EST: gi|33407983|gb|CF213610.1|CF213610
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
EST: gi|56408375|gb|CX016627.1|CX016627
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTG
EST: gi|33406260|gb|CF211887.1|CF211887
EST:     AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCG                         TGGTGAACCTTTGACAGTTC
genomic: AATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtcctt ... gttgttgtagTGGTGAACCTTTGACAGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact

- - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatga