1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGAAAATACATTTTGACTGGTGGTGAAGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttgtactgaactattagcattctatttaaagcttcctccgcatggccatcttattactttagattttatggcccacag
species | Vitis vinifera |
transcript | Vv06s0004g03040.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGCEST: gi|352786044|gb|FQ481839.1|FQ481839
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGCEST: gi|83275230|gb|DV939326.1|DV939326
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGCEST: gi|351041729|gb|FQ455939.1|FQ455939
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGCEST: gi|351044962|gb|FQ449216.1|FQ449216
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGCEST: gi|83275347|gb|DV939355.1|DV939355
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGCEST: gi|351047015|gb|FQ454625.1|FQ454625
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
EST: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGG GTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
genomic: GTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttg ... tggcccacagGTGAGTGGAGTGGCTTTTGACTCATATTGGTCATCACCATCTTCAGATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAAATACATTTTGACTGGTGGTGAAGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGAAAGGTAGTAGCATGGGGCGAGGGGCACAGCTCATGGgtaagtgttgtactgaactattagcattctatttaaagcttcctccgcatggccatcttattactttagattttatggcccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA