Sequence
atgc intronic sequence ATGC exonic sequenceAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttcattcctagtaataagtgtgtgcttccatctataattctccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G033829_T03 (Zea mays), 5'ss of exon 9
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcattt---cattcctagtaataagtgtgtgcttccatc--tataatt--ctccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
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AATGATGGGGATGTCAAAATTGTTGTTGGAAAGAGTCTGGATGTAATAGTTTTGGATGAATCAAAAGATGTACTTCTGGAGgtatgttcctggcagttcggcagacatgtgagaaaggacatcagcatggttgcccccactttgagggttaatttcccctcctttttatttcactttgcgc-----------
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G07260.1 (Glycine max), 5'ss of exon 9
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttcattcc--tagtaataag--tgtgtgcttccatctataattc-tccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
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AATGACGGTGATGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTTTTGGATGAGTCAAAGGATGTTTTGCTTGAGgtacaattcaaatccgttagtttccaagttatatatttccatgtgcagcttgtttgtgttaat--ctaatcgatggttgctgtaatattag------------------
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G20630.1 (Glycine max), 5'ss of exon 9
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatt-tcattcctag--taataagt-gtgtgcttccatctataa-ttctccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
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AATGATGGTGATGTGAAAATAGTTGTTGGTAATAACTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTGCTTGAGgtacaattctaactcataagtttccaagtcatgtatttgcatgtgcagcttgttcgtgttaatctaatgtttgttgtaatattag------------------------
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G29550.1 (Glycine max), 5'ss of exon 9
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttcattcct-agtaataagtgt-gtgcttccatctata-attctccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
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AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGgtaaaatttaaccctttacttttttgtgttatatttgcatctgcacattgatcatgttatttaatgc----ttgttggaatcag-----------------------
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G40130.1 (Glycine max), 5'ss of exon 9
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttcattcctagtaataagtgtgtgcttccatctata-attctccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
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AATGATGGTGATGTGAAAATAGTAGTTGGTAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGgtaaaatttaaccctttacttttagt-tatatttgcatctgcacattgatcatgttatttaatgctcggttgaatcag---------------------------
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G60640.2 (Arabidopsis thaliana), 5'ss of exon 9
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttcatt----cctagtaataagt--gtgtgcttccatctataattctccatctcaat--ttctgtacttttatgggaataattctgatatgtgcttggaatacag
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AACGATGAAGATGTGAAAATAGTGGTTGGAGATAACTTTGATGAAATTGTTCTGGACGATTCTAAAGATGTGCTTCTCGAGgtaatattgtataaaaatccgtcaataaactgatatggatttactcacgtcttctcacctcagcaatactttgttcttaaaacaa-aactcag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188365|gb|CF607714.1|CF607714EST: ATAACTTTGATGAAATTGTTATGGATGAATCAAAGGATGTTCTTCTTGAG ATCTATGCACCATGGTGTGGTCATTGCCAAGCTCTTGAGCCAACATATAAC
genomic: ATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttc ... tggaatacagATCTATGCACCATGGTGTGGTCATTGCCAAGCTCTTGAGCCAACATATAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAGgtatcatttcattcctagtaataagtgtgtgcttccatctataattctccatctcaatttctgtacttttatgggaataattctgatatgtgcttggaatacag
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