Sequence
atgc intronic sequence ATGC exonic sequenceGCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaaattgtttgatgtgattaattaggtttatcttagtcatgattatgaccatgatacatattcaaaacttagaccaaatcaatttggagaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g01890.2 (Oryza sativa), 5'ss of exon 10
GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaaattgtttgatgtgattaattaggtttatcttagtcatgattatgaccatgatacat-attcaaaacttagaccaaatcaatttggagaaat--
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GCATGGAGTGTTCCTGAGGTGCTTCGGCCACTCTATGAATCTTCAAGGGTAGTCGCTCAGAAAATGACTACTGCGgtaagctgtcgtgaaatgatat--tcagctcaaatttcattgat-gtgattacaagttcatcatttcaagtgaaacttgtttttaatgaactcttcaagtttc
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G109987_T05 (Zea mays), 5'ss of exon 9
GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaaattgtttgatgtgattaattaggtttatcttagtcatgattatgaccatgataca-tattcaaaacttagaccaaatcaatttggagaaat
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GCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTTGTTGCTCAGAAAATGACTACTGTGgtacgtgtttatttttttttgcccctcattttttcagcttaaaccttttatatttctttaataaggttgccgatattcattttctattttttcatgaatg-
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G042250_T03 (Zea mays), 5'ss of exon 10
GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaaattgtttgatgtgattaattaggtttatcttagtcatgattatgaccatgataca-tattcaaaacttagaccaaatcaatttggagaaat
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GCATGGAGTGTTCCTGAAGTGCTTCGACCACTATATGAGTCTTCTAGAGTAGTTGCTCAGAAAATGACTACTGTGgtacatgcttaattttttttgccctatgatatctttagtttaaaacttcagaattctttaataaggttgccagtaatcagtttctatttatttatgaatg-
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 9
GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaaattgtttgatgtgattaattaggttt--atcttagtcatgattatgaccatgatacatattcaaaacttagaccaaat-caatttggagaaat
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GCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCAgtaagttcattattgttaagtcaaaaaataaaattgggatttaaagtcaaattttgatg--gactagtggtgctattgtgaacaatgtgcaaactgaaccac-
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 9
GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaa-attgtttgatgtgattaattaggtttatc-ttagtcatgattatgaccatgatacatattcaaaacttagaccaaatcaatttggagaaat
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GCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCAgtaagttcattatcattaagtcatataattgggatttatagccaaatttggatggaatgtgtaaactgaaccacaatcttgagcaaatatagtattatat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721412|gb|FC070776.1|FC070776EST: GACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCA GCATTGCGCTACATCCGGCAAATAGCTCAGGAGACAAGTGGTGAGGTGGTA
genomic: GACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaa ... ttctgtgaagGCATTGCGCTACATCCGGCAAATAGCTCAGGAGACAAGTGGTGAGGTGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAgtgagtagaaattgtttgatgtgattaattaggtttatcttagtcatgattatgaccatgatacatattcaaaacttagaccaaatcaatttggagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaaa