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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATACTTGCTAGCGCATTTGCTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgactagcctttaaccgaagaacaatcatgactttcttctttgtctagggtaattgtctgataaatcttgtgtggacctattttccag

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699707|gb|EE076951.1|EE076951
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAG                         TTGGGGTTGTTTTCTGGGGTTGGGTCTGTCATCCATCCTTGGAACTGGAAT
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTT-CTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAAT
EST: gi|294967324|gb|GW836678.1|GW836678
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAG                         TTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
EST: gi|30252403|gb|CB969954.1|CB969954
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTACAG                         TTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAG                         TTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
EST: gi|33405457|gb|CF211084.1|CF211084
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTACAG                         TTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
EST: gi|294965646|gb|GW837245.1|GW837245
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAG                         TTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
EST: gi|30301245|gb|CB978039.1|CB978039
EST:     CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAG                         TTGGGGTTGGTTCTGANGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG
genomic: CTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgac ... tattttccagTTGGGGTTGGTTCTGGGGTTGGTTCTGTCATCCATCCTTGGAACTGGAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCATACTTGCTAGCGCATTTGCTAAACAGGACTACAGCAAGGCCACAGCTGCTGCATCAAGAGTATTGCAGgttctttgactagcctttaaccgaagaacaatcatgactttcttctttgtctagggtaattgtctgataaatcttgtgtggacctattttccag

- - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC