1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCAGCAGAGCAAGAATATGAGAAGGAAAAACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattcttagttagtccagttaaaatttataaatgatttcatcattgcaggtgcttagtatctattaattattcattgaacttttgaag
species | Vitis vinifera |
transcript | Vv06s0004g00240.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AATTGCAAAA-TGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|110363904|gb|EC927535.1|EC927535
genomic: AATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|351022937|gb|FQ428846.1|FQ428846
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|110419196|gb|EC985406.1|EC985406
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|37188314|gb|CF607663.1|CF607663
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|351036299|gb|FQ458674.1|FQ458674
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|34550178|gb|CF518396.1|CF518396
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTG-ATGCACAAACTGAGACAGAGCTTAAAGAAA-GAAACTGEST: gi|110688028|gb|EE066108.1|EE066108
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGA-GCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTG
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|349807747|gb|FQ402138.1|FQ402138
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|351034062|gb|FQ447979.1|FQ447979
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|110362655|gb|EC926202.1|EC926202
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|110362851|gb|EC926408.1|EC926408
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|34549838|gb|CF518070.1|CF518070
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAAEST: gi|33401795|gb|CF207422.1|CF207422
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
EST: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAG GTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
genomic: AACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctt ... acttttgaagGTTGGAGCACAAACTGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCAGAGCAAGAATATGAGAAGGAAAAACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattcttagttagtccagttaaaatttataaatgatttcatcattgcaggtgcttagtatctattaattattcattgaacttttgaag
- - - - - - - - - - - - - - - - - - AAAGAA