1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACGgtaaatttctcttgttttccttccttcagtaacaaatttctaaaacttatgtggggaactgaattttccagtcttttgcttagatgaatgcttgagtctg...
species | Vitis vinifera |
transcript | Vv05s0102g01180.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTCCTATGCCACCCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACG ATCCCAACTACCCTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACTEST: gi|77584541|gb|DV221342.1|DV221342
genomic: GTCCTATGCCA-CCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACGgtaaatttct ... gatgtctcagATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACT
EST: AGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCCTGCCAACG ATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACTEST: gi|110404767|gb|EC970289.1|EC970289
genomic: AGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACGgtaaatttct ... gatgtctcagATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACT
EST: AGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACG ATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACTEST: gi|110708395|gb|EE085884.1|EE085884
genomic: AGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACGgtaaatttct ... gatgtctcagATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACT
EST: AGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACG ATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACT
genomic: AGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACGgtaaatttct ... gatgtctcagATCCCAACTACACTGAAGATGGAAAAGATGTGCAACCCATTCCTTCGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAGTCCTATGCCACCCATGTTGCCCATCTCCGTAGTAAGGGCTTGCCAACGgtaaatttctcttgttttccttccttcagtaacaaatttctaaaacttatgtggggaactgaattttccagtcttttgcttagatgaatgcttgagtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaac