Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaatttactttgaagtcctatagatgtaagaattgagctatagtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacag

Basic information

species Vitis vinifera
transcript Vv05s0077g01830.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 8
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgt--aatttactttgaagtcc-tata---gatgtaaga-attgagctatagtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacag
||||||||||  | |||||||||   ||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||||||  || || ||  | |||||||   |||    |||    ||| |||     ||| ||   ||| |  ||||  |  |    |  | ||      || |||                             
AAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacgaatccgtttttgtctccctatgttcaatgcaaactatttaattataacaacttaactccttattttcactttaag-----------------------------

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g20860.1 (Oryza sativa), 5'ss of exon 7
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaatttactttgaagtcctatagatgtaagaattgagctatagtatttcctgttgtaatgaatt--tttgaagttgctgatgtcatttctgtttatatacag
|||| |||||  | ||||| |||  || |||| | | ||||||||||||||| | ||| |||||||| ||||||||||||||||||||| | ||  | ||||| |      |||||  | || | || |  ||    |  || ||      | | | | ||     |||   ||||||                             
AAATTAACAGCATGTACAGCAAACAGAGGCTTTTAAACATTCATGAGAATGTTAAAGTTCTGCGATACCCTGATCATTTCTCAACTGGCATATACTTATGgtacggtgagaactttacactcatttacac-tatttctgcagttaattagatccttatggttggctattgccttgaag-----------------------------

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G04620.1 (Glycine max), 5'ss of exon 9
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaatttact-----ttga-----agtcctatagatgta----agaattgagctat--------agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacag
||||||||||||| || || || |  ||||||||||||||||||||||||||||| ||| | || |||||||| || || || ||||| ||||| |||||||||| ||||  |      |||      |||| ||| | | ||    | | ||  | | |        |  |    |  || || || | ||||| ||||  | || |  ||    |  ||||| ||||
AAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaacttggcgtttagtcttatggttttataacaaacttatgttttttttatcaaacaacatcaattatactgcacttttgtagtttattatttgtttgtgattattatacacag

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G16270.1 (Glycine max), 5'ss of exon 9
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaattt------actttgaa----gtcctatagatgta----agaattgagctat--------agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacag
|||| |||||||| || || || |  ||||||||||||||||||||||||||||| ||| | || |||||||| || || || ||||| ||||| |||||||||| ||||       |||||| |    ||| ||| | | ||    | | ||  | | |        |  |||  |  || || |  | |||||  ||| || || |  ||    |  ||||| ||||
AAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacag

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaatttactttgaagtccta-tagatgtaagaattgagctatagtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacag-------------------------------------------------------------
| ||||||||||| || || ||| | | ||||||| ||||||||||||||||| | ||||| || ||||||||||||||||||| ||| || || || |||||||  || |  |    ||| ||| || ||      | |  |  | | |  |   | | ||  |   ||| |||  ||| |  |       ||||| | | ||                                                               
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatg--atatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtt-tatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag