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AATTGAGAAAATCATTGAGGAAAGTCTGCCATCAGTCTTTGGCAATTCGCCAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatttttaagactagtccagatagccttgtttttactctgtgacataattggattatgatctgaatttatgaatttttcttgctgtaatcctta...
species | Vitis vinifera |
transcript | Vv05s0077g00690.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|110720147|gb|EE095816.1|EE095816
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: AAC-TCCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATT-CAG AGACCCTCCCCTGTATACTCTGAGGGCAAGCGTGTEST: gi|110410868|gb|EC976562.1|EC976562
genomic: AACCTC-TTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGT
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|30299412|gb|CB976206.1|CB976206
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTTTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|27583346|gb|CB006041.1|CB006041
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|33406611|gb|CF212238.1|CF212238
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|33407058|gb|CF212685.1|CF212685
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|110392261|gb|EC957554.1|EC957554
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|30137246|gb|CB922584.1|CB922584
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: GCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|110392865|gb|EC957405.1|EC957405
genomic: GCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|27585689|gb|CB008384.1|CB008384
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|27585107|gb|CB007802.1|CB007802
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|32246094|gb|CD711913.1|CD711913
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: GGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|110719299|gb|EE097116.1|EE097116
genomic: GGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|30299334|gb|CB976128.1|CB976128
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|110406864|gb|EC972451.1|EC972451
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|33406531|gb|CF212158.1|CF212158
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|294964251|gb|GW838054.1|GW838054
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACEST: gi|110732746|gb|EE108300.1|EE108300
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
EST: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAG AGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
genomic: CAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatt ... catcttccagAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGAGAAAATCATTGAGGAAAGTCTGCCATCAGTCTTTGGCAATTCGCCAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGgtagctcatttttaagactagtccagatagccttgtttttactctgtgacataattggattatgatctgaatttatgaatttttcttgctgtaatcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC