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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttccatgcccttttgccttgttttccaatattttcaagtacaacttatttcttttatctacatggagatacagtccttatgaggtgatattaataatgggcatttgttgatgtag

Basic information

species Vitis vinifera
transcript Vv05s0077g00620.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 5'ss of exon 9
AAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttccatgcccttttgccttgttttccaatattttcaagtacaacttatttcttttatctacatggagatacagtccttatgaggtgatattaataatgggcatttgttgatgtag
 ||||   |  |  | || |||||||||||||||||||| || || || ||||| |||||||||||  | || ||||| ||||||||||| ||||| |||||| | ||||   |   | |||  |  |||   ||| | |  |||   |  | ||   ||| | ||  |  |    ||    | || |   |  || ||   ||                 
TAAACCTGATCTCCCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATTTATGCTTATTACCATCCAACTgtatgtttcctgccaactgtgctatacttttacatagtgttcagttatagatgttctatttctttagttttat---caaatttcataaatcg-cataaaagttg-----------------

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 9
AAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttcca----tgcccttttgccttgttttccaatattttcaagtaca-acttatttcttttatctacatggagatacagtccttatgaggtgatattaataatgggcatttgttgatgtag----------------------------------------------------
 |||  | |  |||| || ||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||      |    |||||   |   |   |  | | | |  |  | |   |||   | |   |   || |||| | |        |        | ||    | |   |  |  | | |                                                    
CAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaag

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G04070.1 (Glycine max), 5'ss of exon 9
AAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttccatgcccttttgccttgttttccaatattttcaagtacaacttatttcttttatctacatggagatacagtccttatgaggtgatattaataatgggcatttgttgatgtag-------------------------------------------------------
 |||  | |  |||| || |||||||| |||||||| || ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||     | ||||   ||  |||  ||||| |  |  |  |  |   | || |  |  |    | |||             |   ||||   | ||     | |  |  | |                                                         
CAAATCACATCTTTCTCGCTTGCATGAATGGCATTTTCGTTCAGGGCTTGACCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct----cattttatgtt--tttgaaatatgtcaacatttagatccatcctctctttgatcgagtgatgattctgaagcaggaaaatatctctgatttctgtctcctcttttctttgctttcattttcctgagttgagtaccttattgtctgtcacatggtattataag

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 5'ss of exon 9
AAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttccatgcccttttgccttgttttccaatattttcaagtacaacttatttc-ttttatctacatggagatacagtccttatgaggtgatattaataatgggcatttgttgatgtag
|||||   || || |||  ||||||||||||||||||||||| || |||||||| |||||||||||||| || ||| ||||||| || || || || |||||||| | |||   |  |    |||    || | | | ||||   |    |   |   |  ||   || |   | | || | | |      ||    | |||                    
AAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGCATACTACCACCCAACTgtaagttcccaatac--tagaacttcacatcaactctgttcacaaatggttagctcagtgataaagacttaccgtttcatttccttgattatgtatcttatag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715867|gb|EE094404.1|EE094404
EST:     ATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACT                         GTGGAGAGGTGGATGGAGAAACTGGAGGAAACAGAAGTGAAACTTAGAGTA
genomic: ATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttcc ... gttgatgtagGTGGAGAGGTGGATGGAGAAACTGGAGGAAACAGAAGTGAAACTTAGAGTA
EST: gi|351025158|gb|FQ433575.1|FQ433575
EST:     ATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACT                         GTGGAGAGGTGGATGGAGAAACTGGAGGAAACAGAAGTGAAACTTAGAGTA
genomic: ATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttcc ... gttgatgtagGTGGAGAGGTGGATGGAGAAACTGGAGGAAACAGAAGTGAAACTTAGAGTA