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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCACTGAGCTATGGTTGGAAAAGTTCTACAAGAAGAAAACTAACTTGCCTGAACCTTTACCTCACGAATTAGTTGAAAGACTAGAGAAATTCTTGGATgtaagttaattcttattctcaatgaccatcttgatctagacaaacatatttccgacattaacacatcgaccttttcataattgaataacag

Basic information

species Vitis vinifera
transcript Vv05s0077g00250.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00250.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G16180.2 (Arabidopsis thaliana), 5'ss of exon 14
GAGCACTGAGCTATGGTTGGAAAAGTTCTACAAGAAGAAAACTAACTTGCCTGAACCTTTACCTCACGAATTAGTTGAAAGACTAGAGAAATTCTTGGATgtaagtta-attcttattctcaatgaccatcttgatctag---acaaacatatttccgacattaac-acatcgaccttttcataattgaataacag--------
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CAAAACGGAGCTATGGGTCGAGAAGTTCTACAAAAAGACAACAACATTGCCTGAGCCTTTCCCACACGAGCTAGTCGAAAGATTAGAGAAATATCTAGACgtaagtgataaacaaactctctacgatttcagttatctaccatatggatttttttcttacacaatctgtttttgtctgttattacttaattattataagaacag