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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaatattcaccatcctaaatttatatatgtgaaagatgataggtattacacattgtgcctgatctgacttctattttatctgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04190.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G079080_T01 (Zea mays), 5'ss of exon 9
ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaatattcacc--atcctaaatttatatatgtgaaag-atgata-ggtattacacattgtgcctgat-ctgacttctattttatctg-cag---------------
 || |||| |||||| |||||||||||||| ||||| ||||||||||| || ||||| ||  || | |||||||| || ||  | |||||||| |||||||||| | | |    ||   |  ||| |   |     || |   ||   |||||  |||   |   | | || | |  |  |  |||   ||                
TCAAAATGATTATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTCTGTTGAAGCCCGAGTCCTTCCTGCACCTTGGgtaagaataattttatgtcacttttttcctttcaggagcaccttacactattatccatgaggttagttgctcattgttgatgcatcgaacaatttttttgaattcag

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AC189879.3_FGT003 (Zea mays), 5'ss of exon 8
ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaatattcacc--atcctaaatttatatatgtgaaagatgatagg--tattacacattgtgcctgatctgacttctattttatctgcag---------------------------
 || ||||  ||||| |||||||||||||| ||||| ||||||||||| || ||||| ||  || | | |||||| || ||  | |||||||| |||||||| |   | | |  ||   |   ||||  || |      |  | ||   |    ||| | |   | ||    ||  ||  | ||                                 
TCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTGAAGCCCGAGTCCTTCCTGCACCTTGGgtgaggataatcttatgtcactgttattcattttttttcttttgggagcaccttacactattatttatgacgctagtagctcattgttgatgtgctgaataacttttgtgaattcag

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 10
ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaatattcaccatc--ctaaatttatatatgtgaaagatgata----ggtattacacattgtgcctgatctgacttctattttatctgcag---------------
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||  ||||||||||||| || || ||||||||||||||||||||||| | |  | ||  ||   | || | || ||     | |||    |  |    |  ||     |   ||| | |  |||  || |  ||               
ACATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGAATTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCTCCTTGGgtaatgtgcttcttcatcttcttctaaagatctggtttgtcatatactgaaaccttaagttaccttttccctgccattcatta-atttaaagcacttctgagcgcag

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 10
ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaata---ttcaccatcctaaatttatatatgtgaaagatgataggtattacacat-tgtgcctgatctgacttctattttatctgcag----------
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||  ||||||||||||| || || |||||||| || |||||||||||    ||| || ||  ||  |   || ||| | | |    |  | | |   |  | | ||   ||   | |  |||| |    |            
ACATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGAATTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCGGCCCCTTGGgtaatgtgcttctccttctaaagatctgatttgtcatatactgaaactttaatttaccttttccctgtcattcattaatttaaagcacttctgaatgcag

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 9
ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaatattcacc--atcctaaatttat---atatgtgaaagatgat-aggtattacacattgt-gcctgatctgacttctattttatctgcag
 || |||||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||||  |||||||||| || || || ||||| ||||| || |||||||| | || |  | || | |  | |   |||  | ||  ||||| |  | ||   || | | |  |||| ||   |     || |||||||
GCACAATGCTTATGGTCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATTAGTGAAAAGCTAGCTTCTGTAGAAGCGCGAATTCTCCCTGCCCCATGGgtaatgtgcatctcaaccaagaggtgtaagatacttaaagtatgattacttttttttcactattgattgatatgcagtac---ttgtctgcag

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 9
ACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGgtaatattcaccatcctaaatttatatatgtgaaagatgataggtattacacattgtgcctgatctgacttctattttatctgcag
||| || || |||||||||||||||||||||||||||||||| || || || || ||||| |||||||||||||| ||||| |||||||| ||||| ||||||| |  |   | |  |  | |  ||      |  |||| |  || |     || ||     ||     ||| |  |  || |||
ACACAACGCATATGATCAAGATCCATATGCAAAGGAGTTTGGCATGAACATAAGCGAAAAGTTAGCTTCTGTTGAAGCTCGTATTCTTCCAGCTCCATGGgtaaaaaacctaaacagatctctgaatgctcatactatgagaa-tactg----ttatgttaattcgtctctctttgcttgctacag