Sequence
atgc intronic sequence ATGC exonic sequenceTAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactctgtaggcctgctgcattccagttcagtatgtatgaaccatattgatgtattatttattttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G24080.1 (Glycine max), 5'ss of exon 10
TAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactctgtaggcctgctgcattcc---agttcagta-tgtatgaacc--atattgatgtattatttattttgacag
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TGATGCTCGAAGGAGGACAGCTAATCAAATTTACATTTTGTTAATTATACTTCTCATACTTAGTCAAGATTCTTCTTTCAATGCAGGAATTCATAAGCTGgtaacactttttttttggcattagacaaagtcttaaagtgtaataatgattgtgctaaatactaatctagtatatgtatggacag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 9
TAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactct-gtaggcctgctgcattcc---agttcagtatgtatgaaccatattgatgtattatttattttgacag
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CAATGCTCCAAGTAGGACAGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttgtcttttggcaatatattttgctgtgaaaatccaaggattgtgctaaatgctaatgtggtatgtgaatggacag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 9
TAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactctgtaggcctgctgcattccagttcagtatgtatgaaccatattgatgtattatttattttgacag
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TGATGCTCGAAGGATGACAGCTTATCAAATTTACATGTTGTTAATTATACTTCTCATACTTAGTCAAGATACTTCTTTCAATGCAGGAATTCATAAGCTGgtaacacttttttttggcattagacagtcttaaactgtaatgattgtgctaaatactaatctagtatatgtatggacag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 8
TAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactct-gtaggcctgctgcattccagttcagtatgtat-gaacc--atattgatgtattatttattttgacag
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CAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 9
TAATGCGTCAAGGAGGACA---TCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactctg----taggcctgctgcattccagttcagtat--gtatgaaccatattgatgtattatttattttgacag
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---CGCTTCAAAGAGAACATCATCTAATCAAATATACATGATGCTAATTGTACTTCTCATACTTAGTCAGGATTCATCTTTCAATTCAAGCATTCACAAGATGgtacgtgctatttccaatcatagggttgaaacgatttttctcaacttcagtattgtttctgattatgtgtcatttgaatag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714238|gb|FC064147.1|FC064147EST: TTCTCATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTG ATACTTCCTAGTGTTCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCT
genomic: TTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatgg ... attttgacagATACTTCCTAGTGTTCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactctgtaggcctgctgcattccagttcagtatgtatgaaccatattgatgtattatttattttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG