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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGACAGCCATTTGATAGCTTATGCTCCAATGCTGAACATACTTCTTGTTGGAATAGCTTCTGTTGATTGTGTCCAGATTTTCTCATTACATGGCTTGgtatgttaagcttctactgaccaaacatctactatgctgatagagaaaaaaattttagttggtttgaccagatactttgatgaacaatggtatttcctgcatagttcatgttttgtcagctaatctgtgaggtttttctaccatgctttccag

Basic information

species Vitis vinifera
transcript Vv05s0020g02570.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G28070.1 (Glycine max), 5'ss of exon 10
GAGTGACAGCCATTTGATAGCTTATGCTCCAATGCTGAACATACTTCTTGTTGGAATAGCTTCTGTTGATTGTGTCCAGATTTTCTCATTACATGGCTTGgtatgttaagctt--ctactgaccaaa-----catctactatgctgatagagaaaaaaattttagttggtttgaccagatactttgatgaacaatggtatttcctgcatagttcatgttttgtcagctaatctgtgaggtttttctaccatgctttccag
  |  ||| | |||||||   |||||||||||| |||||  ||||  |||||||||| || |||||||||||||| || || || ||| | |||||||||||| ||| |  |      || |   ||      || | |  | ||   | |||| ||||  || |         |   ||| |    | || ||       | |||                                                      
AGGAAACAACTATTTGATTAATTATGCTCCAATACTGAATGTACTCTTTGTTGGAATTGCATCTGTTGATTGTGTGCAAATATTTTCACTCCATGGCTTGgtaagtttaattcaatccctaatttaaaatgttattttcgctactacaacagaagaaaacctttgcaaacacaccagaataataaagttaaaaac------ttctg------------------------------------------------------

upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G10970.1 (Glycine max), 5'ss of exon 10
GAGTGACAGCCATTTGATAGCTTATGCTCCAATGCTGAACATACTTCTTGTTGGAATAGCTTCTGTTGATTGTGTCCAGATTTTCTCATTACATGGCTTGgtatgttaagcttctactgaccaaacatctactatgctgatagagaaaaaaattttagttggtttgaccagatactttgatgaacaatggtatttcctgcatagttcatgttttgtcagctaatctgtgaggtttttctaccatgctttccag
  |  ||| | |||||||   |||||||||||| |||||  ||||  |||||||||| || |||||||||||||| || || || ||  | |||||||||||| ||| | ||       | |    || ||   || |  |   || |  | ||  | ||  | | |    |      |||||| |   |    | |  || |    ||  ||                                        
AGGAAACAACTATTTGATTAATTATGCTCCAATACTGAATGTACTCTTTGTTGGAATTGCATCTGTTGATTGTGTTCAAATATTTTCGCTCCATGGCTTGgtaagtttaactc-----aatccctaatttaaagtgttatt---gataggacttagaatttatataaatgaaa-----gatgaagaccagctactgcaacagaagaaatcctt----------------------------------------