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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAATGTTGCATTAAGGAAGTCGAGAAGCCACATATGGACAGGAGTTGTGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggactttcttatctgtttgcctctgttgtacagccttctgtctaaatggttttatgcatgctagtttctcaatttgggttctttttgtgttccatgg...

Basic information

species Vitis vinifera
transcript Vv05s0020g02530.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408065|gb|CF213692.1|CF213692
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGTGCAG                     
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCC-A----AGgtgggacttt ... cctagt
EST: gi|33407978|gb|CF213605.1|CF213605
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGTGCAG                     
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCC-A----AGgtgggacttt ... cctagt
EST: gi|110690752|gb|EE068184.1|EE068184
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGGCA-GGCCTGAAAAAGTTGTTGGTTCAGTGTTGCGTTACAAC
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTG-CAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAAC
EST: gi|161719505|gb|FC067398.1|FC067398
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCTGGAAAGGT-GTTGGTTCAGTGTTGCGTTACAACA
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
EST: gi|33404616|gb|CF210243.1|CF210243
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
EST: gi|156735426|gb|EV239547.1|EV239547
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
EST: gi|71860512|gb|DT009567.1|DT009567
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCT
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCT
EST: gi|161706097|gb|FC056247.1|FC056247
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
EST: gi|110730439|gb|EE107523.1|EE107523
EST:     TGGAATCCCCATGGCAAGGCTTCCCCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCTGNAAAGGTTGTTGGTTCAGTGTTGCGTTANCA-C
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTA-CAAC
EST: gi|110387017|gb|EC951656.1|EC951656
EST:     TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAG                         GAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA
genomic: TGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGgtgggacttt ... cctagtgcagGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACA