Sequence
atgc intronic sequence ATGC exonic sequenceGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 8
GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag
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GCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGgtgtg----cctctgctttgatgcagtatcaaaatttg-----catatagtttcattttatagtttgattttatctactttgtttgt-----ttgatattggcag-----------------
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 9
GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag
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ACACTCAACTGACAGAGAAGTTGCTATCATGATACTCATGGCGTACCTTTCATATATGCTGTCGATGgtgagtg--cctacaaacta-taagaacttcaaaataagcaactctcttaagtcaaattatttcggacatttatcaattacttcctccgtcccaaaatataag-------------------
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 8
GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag
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GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCGTATATGCTGTCTGAGgtaaga---------attttctctgaaa------cttggccacctttttagtgtaaataattcccatgctaaccgatttattt-ctttgacag-----------------------------
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 7
GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag
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GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAAgtaaga--------aaattctctgaaactcgacccaccacctttgtagtgtaaaaaattccaatgctaa---ccaatttatttctttggcag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110696446|gb|EE072580.1|EE072580EST: AGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA CTGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATG
genomic: AGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatc ... tgtcttacagCTGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG