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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaaaatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag

Basic information

species Vitis vinifera
transcript Vv05s0020g01740.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 9
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaaaatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag
| ||||| || ||||| ||||||||| | ||| | | ||||||  |||| || |||||||||||||| ||||| || |||||||| |||||  | |  | |||||    ||  |||| |  | ||| ||        ||||||| |||     |        |  | ||    | ||   |  ||  |||  | |  | ||| || |                                          
TTTTAATTCTCTTTGGAGGTGAAGATGCCAAAGGGAAGAAACTACATGACCTTCATATGTTTGATCTGAAGTCATTAACATGGCTTCCTCTGAACTATAAgtaagcta-ttctagtcta--gaattcaacgatagtgtaatatcatta----ctaaagaaagaaaagaaagcatggaggctaattagtttcctcttggtcatttcac------------------------------------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 9
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggttt-cagtcaactgta-ttga--atttctcactaatatctttaaatattgtc-tttctactaaaatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtat-gtacag---------------------------
| |||||  | ||||| || |||||| | ||||| |||||||| ||||||||||||||||||||||| || || ||||||||||| ||||| || ||||||||| || |||| |  |    |||  ||||  | ||||   |   |  || ||| |      |||  |||   || |||| ||     |   || | | | | |    | |    ||| | |  | | |    |||    || |      |||                             
TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctttgttgtggttgattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G02680.1 (Glycine max), 5'ss of exon 7
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaaaatattttgaatttttttt--ctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag
| |||||  | ||||| ||||| ||| | ||||| |||||| | ||||||||||||||||| ||||| ||||| || |||||||| || ||||| | ||||||||||  |   |   ||  || | || ||  |    | |||||    ||| |  |    ||     ||||| ||     |||     | |||||| |||                                                  
TTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagtgattaaaaagaaaaagt-tggacttagttttgattatctagtcataatcacccaatatcctgatattatgtcgcctttgaaattgtattatttgcag------------------------------------------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 7
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggttt-cagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaaaatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag
| |||||  | ||||| || ||||||   ||||| |||||||| ||||||||||||||||||||||| || || ||| ||||||| || ||||| | ||||||| ||  ||| |  |    |||  |  ||||||   |  | | |||   | ||    ||| |  | || ||||   | ||   |   | | ||| |||                                                  
TTTTAATATTGTTTGGAGGAGAAGATGTAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGTCATGGCTTCCACTTCACTACACgtaaatgtttttacgctttgttgtgattgatttcttctttttctttttctttttttaagttcaaaaacaaaatttatgacttccatg--tgactatctgctg------------------------------------------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 8
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaaaatattttgaattttttttctttattat----atgccatatctccttatgaactattatctaagatttggggttatgtatgtacag
| |||||  | ||||| ||||| ||| | ||||| |||||| | ||||||||||||||||| ||||| ||||| || |||||||| || ||||| | ||||||||  || || |    |     ||| | ||     | || | | |||  ||  ||   |      |||||  ||| ||||||| ||  | |||    |||  || |  |||| ||||  ||||| | |  |   |                
TTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaag--ggattaaaaagaaaaagttggacttagttgtgat-tatctaatcataatcaccc------aatatcctga-tttttttactgcaatatcctgatgttatgttgcctt-tgaa--attatattacttgcag----------------

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaa-aatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag
| || || ||||| || |||||||| ||||| |  |||||||| || ||||| |||||||||||||| || || |  |||||||| |||||| ||||||||| |||   ||| | |        || ||  | |  || ||   | |  | ||||   | |||||    || | ||||     || |  | |||| |    | |                                              
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagt---ttttactt-------tttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaa-acag---------------------------------------------