1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgtactggcagtagtcctttgtcagaaattttttgcatttatatttaccactcttgtaaatctttttggatgttttcctgtatgcag
species | Vitis vinifera |
transcript | Vv05s0020g01180.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTCEST: gi|110717892|gb|EE094156.1|EE094156
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
EST: AA-TTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAEST: gi|110360884|gb|EC924326.1|EC924326
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGA
EST: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTCEST: gi|351026518|gb|FQ428530.1|FQ428530
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
EST: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTCEST: gi|351019753|gb|FQ439570.1|FQ439570
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
EST: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTCEST: gi|351019480|gb|FQ429615.1|FQ429615
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
EST: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTCEST: gi|351027526|gb|FQ446689.1|FQ446689
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
EST: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAG ATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
genomic: AAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgt ... ctgtatgcagATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgtactggcagtagtcctttgtcagaaattttttgcatttatatttaccactcttgtaaatctttttggatgttttcctgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA