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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCACTCTTTTGTTCGAGACCAAGCCACAACAAGAATTGCTAATATTGCTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgaccttaaacattctcatgttttctggtcaagtattagattgcttttatataatttcttatcaggaaaaagaagagattgcttttatataatgtct...

Basic information

species Vitis vinifera
transcript Vv04s0044g01290.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698751|gb|EE076609.1|EE076609
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|26257410|gb|CA808473.1|CA808473
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|26257306|gb|CA808369.1|CA808369
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|110360965|gb|EC924410.1|EC924410
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|110361379|gb|EC924846.1|EC924846
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|161719911|gb|FC068682.1|FC068682
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|27583422|gb|CB006117.1|CB006117
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
EST: gi|110732912|gb|EE108613.1|EE108613
EST:     CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCG                         ACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA
genomic: CTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgacctt ... ttctgagcagACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATCACTCTTTTGTTCGAGACCAAGCCACAACAAGAATTGCTAATATTGCTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGgtatgaccttaaacattctcatgttttctggtcaagtattagattgcttttatataatttcttatcaggaaaaagaagagattgcttttatataatgtct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa