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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgttaacttacaatttatgttgattacaagaggcattttcttgcctccactaattgcccaatatgtcaggcagagatgttgattgtataattgtttcttctcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03620.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 9
CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttg--ttaacttacaatttatgttgattacaagaggcattttcttgcctccactaattgcccaatatgtcaggcagagatgttgattgtataattgtttcttctcag
||||| || |||||||| |||||||| || |||||||||||||| || ||| |||||||| |||| ||||| |||||   || |   | |||     |||| |   | | | || |  | |  |     |   |    |||| | |     || |     | |  ||               
CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatat-ttaaatttagcttcacctagattagcc------------

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 9
CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttg--ttaacttacaat--ttatgttgattacaagaggcattttcttgcctccactaattgcccaatatgtcaggcagagatgttgattgtataattgtttcttctcag
||||| || |||||||| ||||| || || |||||||||||||| || |||||||||||| |||| ||||| |||||   || |   | |||  | ||   | ||   | |    |||| |||        ||| |      ||||  | || | || ||  ||  |  ||             
CTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgggtttgacaaaaatcttttattgaagatttcaatggg--ggcatgtttgacaaaaatctttttttgaagat-------------

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G36990.1 (Glycine max), 5'ss of exon 9
CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgttaacttacaatt-tatgttgat-tacaagaggcattttcttgcctccactaattgcccaatatgtcag-gcagagatgttgattgtataattgtttcttctcag
||||| || |||||||| ||||| ||||| ||||| |||||||| || |||||||||||| |||| |||||  || | |  |   | ||   ||| |||   |   | ||| ||||| ||    | |  ||||||   | | | ||  |  |   | ||     ||   |    |        
CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtctttctatggaaaagcgtatattgggatttgaaaggaattttttt----caa--aattgcagcacaagccattgttggagtctttggcctacgttaacct--------

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G08290.1 (Glycine max), 5'ss of exon 9
CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgttaacttacaatt-tatgttgattacaagaggcattttcttgcctccactaattgcccaatatgtcaggcagagatgttgattgtataattgtttcttctcag
||||| || |||||||| ||||| ||||| ||||| |||||||| || |||||||||||| |||| |||||  || | |  |   | ||   ||| |||  |   | ||| ||||  ||         |||| |     | | |||    | | ||| |   |  |    ||||       
CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAGgttagtctttctatgaaaaagaatatattggatttgaaaggaatttcttt----tagaaaatttcagtgcaggccagt---aaacgttaaccttgaacacctttccc-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884542|gb|DT033597.1|DT033597
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|30137292|gb|CB922630.1|CB922630
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|30130168|gb|CB915507.1|CB915507
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110425434|gb|EC991819.1|EC991819
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110690274|gb|EE067240.1|EE067240
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|351049150|gb|FQ449872.1|FQ449872
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGGGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110684657|gb|EE062188.1|EE062188
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCCAC-AGATGAGGAAGACAAGTG
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGC-ACCAGATGAGGAAGACAAGTG
EST: gi|30137146|gb|CB922484.1|CB922484
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|71882495|gb|DT031550.1|DT031550
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110693944|gb|EE070616.1|EE070616
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGANGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110689984|gb|EE066684.1|EE066684
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110386665|gb|EC951280.1|EC951280
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|34362336|gb|CF403921.1|CF403921
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
EST: gi|110409069|gb|EC974725.1|EC974725
EST:     ATGATCCTTCAGTCAAAGATTTGCTAGCGTCCATGCAAAATGAGTCAGAG                         TCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA
genomic: ATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgt ... ttcttctcagTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA