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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGgtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattataccaagaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacag

Basic information

species Vitis vinifera
transcript Vv04s0023g01780.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G06340.1 (Glycine max), 5'ss of exon 8
GTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGgtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattataccaagaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacag
||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||  |   ||      |      |  |         |||   | |  |  |||||    |    | |  || |  | | || |                                                  
GTGGCTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATATAAAACTTTCATGgtaaaattctaaaattggctgcaaattctaacttctttggcacctacacttgatattaatttatagcatc--tgcttatatgaaccag------------------------------------------------

upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G25390.1 (Glycine max), 5'ss of exon 8
GTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGgtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattatacca-agaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacag
||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || || || |||||||||||| |   |  ||  | ||        | | |       |||   | |  |   ||||    | || | |   | || |   | |                                                    
GTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATGgtacattctcaaactagctgcaaattctaagttcttcg-gcacctacacttgccattaatttatagcatctgctaatatgaaccag---------------------------------------------------