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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGgtccaaatccagttcagatttattctagttttggtctgacattggctaatgaaatgcttggatactaagctgattttcaactaattttggtggttctatggaatgcacttgcttattttcatttttttccccctttgtttggtag

Basic information

species Vitis vinifera
transcript Vv04s0023g01040.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
TGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGgtccaaatccagttcagatttattctagttttggtctgacattggctaatgaaatgcttggatactaagctgattttcaactaattttggtggttctatggaatgcacttgcttattttcatttttttccccctttgtttggtag
||| ||||||||||   |     | ||  ||||||| |||||||||||||||||||||||||| ||||||||||||  ||  |  || | |||   ||||||  || |||  |    | |||||  ||   |  ||  |  |  || |  | |||| ||     ||| ||| ||  ||||| ||| |   ||  | |   |                                            
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgt--aactcctttgtttacttatta-agcagttatcc-atgtctgcaagagtaatgttt-----ctatgcttatagtcaaccaatat--atgactatgcag--------------------------------------------

upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
TGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGgtccaaatccagttcagatttattctagttttggtctg-acattggc--taatgaaatgcttggatactaagctgattttcaactaattttggtggttctatggaatgcacttgcttattttcatttttttccccctttgtttggtag
 || |||||||| |   |   | | ||  ||||||| |||||||||||||| |||||||||||||| ||||| ||| |||  |  || | |||   ||||||     |   ||| |  ||| |   |||||   ||     | || |  ||| |  |||||                                                                                       
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttt-tagcagtttctttcaatgtactgaccttaaagccatgctgcag-----------------------------------------------------------------------------------