Sequence
atgc intronic sequence ATGC exonic sequenceAGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g40490.1 (Oryza sativa), 5'ss of exon 10
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttt-tcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcag
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GGAATTTTTTGAAGGTCTGAACATGAAAGTGGAGCAACAAGTTCCAATACTCTTGGTTGAGAGACAGGCTCTAAATGAGGCTTTAGAAACTGAGAAAAATgtaagtg-----gcatgaacatgagagttttgttatgtttttgcgcagaatgttag--tatattttgaacttaca--aggttttcaatttctgtc-atctcag------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g42820.4 (Oryza sativa), 5'ss of exon 10
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcat-ttttcatagcaacaggtactttcttgtcttttatt--ttaagcttccatcaagtttgaatgttctctttattttatgggcag
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AGAATTCTATGAGGGTTTGAACATGAAAGTGGAACAACAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCCGAGAAAACTgtaag---tgaaatgatcattttataatattctaacagtaatgtacattatttaacttattgttcctttgacctccttaatag----------------------------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G342105_T02 (Zea mays), 5'ss of exon 5
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcata-gcaacaggtactttcttgtcttttatt--ttaagcttccatcaagtttgaatgttctctttattttatgggcag
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AGAATTTTATGAGGGTATGAACATGAAAGTAGAGCAACAAGTTCCCTTGCTTTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAAGCAGAGAAATCTgtaagtgacac--cctttcctttattatgtggtatatataacatatatctaatgtactctcgtcgattag-----------------------------------------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM5G869767_T01 (Zea mays), 5'ss of exon 1
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttct-tgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcag
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AGAATTTTATGAGGGTATGAACATGAAAGTAGAGCAACAAGCTCCCTTGCTTTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAAGCAGAGAAATCTgtaag---tgacaccctt------tcctttattgtgtgaatatgtggtatatataacatatatccaatgtactctcgtcgattag------------------------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 5
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcattt--ttcatagcaacaggtactttcttgtcttt----tattttaagcttccatcaagtttgaatgttctctttattttatgggcag
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AGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCTATGGAGGGAGAAAAGAATgtaagtgtcaatgtgtttaactttccatttcattcatggaatattgttatttctgttctttctagtatcttgacttcgaaatgttcttttat-ttctcactattgaatgtag--
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G06650.2 (Glycine max), 5'ss of exon 4
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcattt--ttcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgtt-ctctttattttatgggcag
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AGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAACAAATTCCTATGCTCTTGGTTGAGAGACAAGCGCTGAATGAGGCTATGGAGGGAGAAAAGAATgtaagtgttaatgtgtttaacttcccatttcattcatggaatgctgttatttctattctttc-tagtgtcctgtcgaaatgttcttttatttctcactattgaatgtag--
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 7
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagc-ttccatcaagtttgaatgttctctttattttatgggcag
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AGAGTTTTATGAGGGTTTACATATGAAGATGGAGCAGCAAGTTCTGATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATgtaaatgttaatgttttcaactt-tcattctatgttttgccttttatttctcttctttacatcataccccttccatt--gttctaattttgcattgcttttgaatgtag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 8
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagc-ttccatcaagtttgaatgttctctttattttatgggcag
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AGAGTTTTATGAGGGTTTACATATGAAGATAGAGCAGCAAGTTCCGATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATgtaaatgttaatgctttcaactt-tcattctatgttttgccttttatttctattatttacatcataccccttccatt--gttctaattttgcattgcttttgaatgtag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 8
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcag
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AGAGTTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAGTTCCAATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATgtaagtgttaatgttttcaacttccattcttgaattttgccttttatttctcttctttacatcatatcccttctattgttctaattatgca--ttgctttgaatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720145|gb|EE095821.1|EE095821EST: TCTTGGTTGAGAGACNAGCACTAAATGAGGCCATGGAGGGAGAAAAGA-T GGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAG
genomic: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggcta ... ttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA