1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGTTGTTTCTTTATGATGGGAAAATCGTCTGGGAAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGgtaattactgaaaaccatgtatctgactgacaatctgggttgaaatcaagagaagatcaattggttgtttggatagtgcctcccaaacttcttatccaag...
species | Vitis vinifera |
transcript | Vv04s0023g00290.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGGAATGATTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAG TTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAGAGCACATACTTCEST: gi|110361223|gb|EC924681.1|EC924681
genomic: AAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGgtaattactg ... gcatcttcagTTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAGAGCACATACTTC
EST: AAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAG TTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAGAGCACATACTTCEST: gi|30136442|gb|CB921780.1|CB921780
genomic: AAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGgtaattactg ... gcatcttcagTTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAGAGCACATACTTC
EST: AAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAG TTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAGAGCACATACTTC
genomic: AAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGgtaattactg ... gcatcttcagTTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAGAGCACATACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTGTTTCTTTATGATGGGAAAATCGTCTGGGAAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGgtaattactgaaaaccatgtatctgactgacaatctgggttgaaatcaagagaagatcaattggttgtttggatagtgcctcccaaacttcttatccaag
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctccc