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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaatcagaattttaaaatgtagcttcttgtgtaacctcctgagattatgtttctgtcttgtcaaatttcacacacaaaattccaaaatacctaacacgttatcatgtattttag

Basic information

species Vitis vinifera
transcript Vv04s0023g00140.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110356881|gb|EC920025.1|EC920025
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
EST: gi|110724761|gb|EE100872.1|EE100872
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
EST: gi|110712695|gb|EE087976.1|EE087976
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
EST: gi|71865271|gb|DT014326.1|DT014326
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTC
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTC
EST: gi|161715809|gb|FC065164.1|FC065164
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
EST: gi|30135371|gb|CB920709.1|CB920709
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
EST: gi|30129653|gb|CB914992.1|CB914992
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCCTGAA-TATGTGGACTTCAATGTTGTTCGCTGTGCTGTCAT
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCC-TGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCAT
EST: gi|161719832|gb|FC065768.1|FC065768
EST:     GCTTTGAATAAGTTTTTCGAGAATGTTTTACAG                         GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA
genomic: GCTTTGAATAAGTTTTTCGAGAATGTTTTACAGgtgagttcaa ... tgtattttagGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCA