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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGATCAAGAATAGAACCCATGCATTCTACCATTGGAATCGAAATGATGATGGGAAAAAAGTACCAACTGATTCTGTCGTATTCTACAATCAGTACTGgtaagtattgttattttctccttttctttctgccaagtagcatcatgccaacatttagcttatatctgtctcacacccatcatgtgttgttagatttggt...

Basic information

species Vitis vinifera
transcript Vv04s0008g06520.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06520.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G11790.1 (Glycine max), 5'ss of exon 9
TGGAGATCAAGAATAGAACCCATGCATTCTACCATTGGAATCGAAATGATGATGGGAAAAAAGTACCAACTGATTCTGTCGTATTCTACAATCAGTACTGgtaagtattgttattttctccttttctttctgccaagtagcatcatgccaacatttagcttatatctgtctcacacccatcatgtgttgttagatttggt-
||||||| || ||||| ||||||||  ||||||| |||||||| ||||||||||| || |||||||| ||||| ||| | ||| |  | |||||||||||||| ||    |     | |   ||      |||     || | || |   | || |  | ||| |   | |       | | | |    ||  |  |  | 
TGGAGATAAAAAATAGGACCCATGCTATCTACCACTGGAATCGCAATGATGATGGCAAGAAAGTACCGACTGACTCTTTTGTACTGCATAATCAGTACTGgtaggttccctccaccttttgcttgggcattgctttcaagtagcagggagaaatatgccatatcttgctgttgtgatgaac-tataagattgaaagttatc

upper sequence: Vv04s0008g06520.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G11790.3 (Glycine max), 5'ss of exon 9
TGGAGATCAAGAATAGAACCCATGCATTCTACCATTGGAATCGAAATGATGATGGGAAAAAAGTACCAACTGATTCTGTCGTATTCTACAATCAGTACTGgtaagtattgttattttctccttttctttctgccaagtagcatcatgccaacatttagcttatatctgtctcac-acccatcatgtg-ttgttagatttggt--
    ||| || ||||| ||||||||  ||||||| |||||||| ||||||||||| || |||||||| ||||| ||| | ||| |  | |||||||||||||| ||    |     | |   ||      |||     || | || |   | || |  | ||| |   | |    |   |  ||  | |||  || | |  |  
----GATAAAAAATAGGACCCATGCTATCTACCACTGGAATCGCAATGATGATGGCAAGAAAGTACCGACTGACTCTTTTGTACTGCATAATCAGTACTGGTAGgttccctccaccttttgcttgggcattgctttcaagtagcagggagaaatatgccatatcttgctgttgtgatgaactataagattgaaagttatcattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402362|gb|CF207989.1|CF207989
EST:     GATGGGAAAAAAGTACCAACTGATTCTGTCGTATTCTACAATCAGTACTG                         GGCAAGGAATCTACAGAGGAGGAGGCTGAAGAGGAACCATATCAGGACTAT
genomic: GATGGGAAAAAAGTACCAACTGATTCTGTCGTATTCTACAATCAGTACTGgtaagtattg ... attcatccagGGCAAGGAATCTACAGAGGAGGAGGCTGAAGAGGAACCATATCAGGACTAT
EST: gi|110707436|gb|EE083834.1|EE083834
EST:     CAATCAGTACTG                         GGCAAGGAATCTACAGAGGAGGAGGCTGAAGAGGAACCATATCAGGACTAT
genomic: CAATCAGTACTGgtaagtattg ... attcatccagGGCAAGGAATCTACAGAGGAGGAGGCTGAAGAGGAACCATATCAGGACTAT