1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACCACGGAAGCTGGCCTTGCTCCTGCCTGCAAAGATAATTGTTCTGGTGCACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgcattgttcatacttcccaagtatccattttccatagattgtagcctcaaggaacctacaagaaaatgttaaaattgtgggattaagaaatgccaacatgtttaattttaatcaactttgaagtaatagtctatagttttagcttaaactcacaccttccatatttgttgatttgaag
species | Vitis vinifera |
transcript | Vv04s0008g03600.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACTAAAATTGCAAATATGGAAACGAACATATAATGGCAGCAAAGGAAAG ATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGAEST: gi|110416328|gb|EC982301.1|EC982301
genomic: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgca ... tgatttgaagATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGA
EST: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAG ATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGAEST: gi|110423391|gb|EC989736.1|EC989736
genomic: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgca ... tgatttgaagATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGA
EST: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAG ATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGAEST: gi|30327836|gb|CD011098.1|CD011098
genomic: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgca ... tgatttgaagATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGA
EST: CACTAAAATTGCAAATATGGAAACGAACATATAATGGCAGCAAAGGAAAG ATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGAEST: gi|352781815|gb|FQ469113.1|FQ469113
genomic: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgca ... tgatttgaagATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGA
EST: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAG ATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGA
genomic: CACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgca ... tgatttgaagATGATTTTGGATGTTACAAGCAACATGGCTGCAGTTGAAGTTGGGGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCACGGAAGCTGGCCTTGCTCCTGCCTGCAAAGATAATTGTTCTGGTGCACTAAAATTGCAAATATGGAAACGAACATTTAATGGCAGTAAAGGAAAGgtctgttgcattgttcatacttcccaagtatccattttccatagattgtagcctcaaggaacctacaagaaaatgttaaaattgtgggattaagaaatgccaacatgtttaattttaatcaactttgaagtaatagtctatagttttagcttaaactcacaccttccatatttgttgatttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA