1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAACTGATGCGATCTCAATATTGGGGGAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttcaaactctgaatttttctcatcaacaaaaaattattaagcttactgtattttacaaactaggagaataatgtaaatcaaacaacttaggcatggtagatgtattcacattctctagttaactgattgtgtttgcag
species | Vitis vinifera |
transcript | Vv04s0008g03180.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA GTTAAATTTATTGGATGCAACTATGAAAGCACCAGTTATTGAATTCCATCCEST: gi|110425749|gb|EC992140.1|EC992140
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA GTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCCEST: gi|110694624|gb|EE071891.1|EE071891
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: CTTTTGTGTGACCATCTAAA GTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCCEST: gi|32267964|gb|CD717123.1|CD717123
genomic: CTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA GTTAAATTTATTGGATGCAACTATGAAAGCACCAGTTATTGAATTCCATCCEST: gi|34417073|gb|CF415827.1|CF415827
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA GTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACTGATGCGATCTCAATATTGGGGGAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttcaaactctgaatttttctcatcaacaaaaaattattaagcttactgtattttacaaactaggagaataatgtaaatcaaacaacttaggcatggtagatgtattcacattctctagttaactgattgtgtttgcag
- - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC