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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTgtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtag

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 9
TGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTgtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttg--aatggtag
|||||| |||||||| ||  |||| || |  |||||| |||| || ||||| ||||||||||||||||||||||| ||       | ||| |    ||   |   |||  ||   ||    |  || |  ||   |  | | |  | |||| ||  ||||  ||
TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgta------atccaatt---gcttgact-ttgccataccttgttcttattctcttttttacctttctaatgtcttctgttaatgccag

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 10
TGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTgtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaa-cttggttataattcagaattgttttttctcttttgaatggtag
|||||| |||||||| ||  |||| || |  |||||| |||| || ||||| ||||||||||||||||||||||| ||       | |||||      ||   | |||| ||   ||   |||  ||    || |   || |  | |||  | |  |||  ||
TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgta------atccagttg----catgactttgacataccttgttcttattttctttttacctttctaatctcttctgttgatgccag