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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATATAACCTGGTTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGgtaagtttctggcatctatgctatgttttcaatctttcatgtttaagctgattttttgccactcataaatactctacttgtggaggctgctttttacttg...

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTG                         GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
genomic: TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGgtaagtttct ... ccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
EST: gi|110361720|gb|EC925214.1|EC925214
EST:     TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTG                         GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
genomic: TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGgtaagtttct ... ccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTG                         GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
genomic: TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGgtaagtttct ... ccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTG                         GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
genomic: TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGgtaagtttct ... ccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTG                         GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC
genomic: TTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGgtaagtttct ... ccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACC