Sequence
atgc intronic sequence ATGC exonic sequenceAAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgtagctaccttgaactgatttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgtatacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g51430.1 (Oryza sativa), 5'ss of exon 9
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgtagctaccttgaactgatttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgtatacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag
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AAATGCAAGAGATCCTAGATCAACAAGTTGCAGAAGAAGCAGCTGAGGCTGAGGGTGCAGGTGCTATGGCGACAATAGCAAACCAGCGTAGAACTGCAAAgta--tgcttc---ttcctttctttgcttcacacatgtttctgtacttccagtaggtg----ctaggtagtatgat----atattgatatt----atatctttcatgtttcagagga-------------------------------------------------------------------
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G070045_T01 (Zea mays), 5'ss of exon 4
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgtagctaccttgaactgatttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgtatacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag
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AAATGCAAGAGATCTTAGATCAACAAGTTGCAGAAGAAGCAGCTGAGGCTGAGGGTGCTGGTGCTATGGCGACAATAACAAACCAACGTAGAACTGCAAAgtacacttcttttcctcact----agataaatttctgttcttcca------gtatgttatgctatgctattatgatatgtgtaatg------tagaaatatgtcttg-cattttgca-------------------------------------------------------------------
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 10
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgta-gctaccttgaactg--atttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgtatacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag
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AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCGGCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggc-atcttgttctatgatttacttgatagttttactgcattta--------------------------------------------------------------------------------------
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 5'ss of exon 10
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgta-----gctaccttgaactgatttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgt----atacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag-----
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AGATGCAAGAAATTCTAGACCAACAGCTTGCTGAAGAAGCAGCAGAGGCTGAGGGAGAAGGTGCGATGGCATCTGTAGCAAATCCTCGAAGGCCTGGCAAgtgagtctgatattttttgttcgtatttgtcttgatttgttgtcttatctgtt-attcaaaatatctttcacttttttactaggggtttgactaagctatat-tttgcattgatttaatgtcctgaaaagcaatggaattttattaaagtccccataatcatttgtgacatgtcctatatttattctgttgaatccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717701|gb|FC068541.1|FC068541EST: GAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCNNN NNNNTCTACAACTGCAACAGCTTCTTCGAGGAACTTGACACAACAGAAGTT
genomic: GAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgtagctacct ... ttctctgcagAAAATCTACAACTGCAACAGCTTCTTCGAGGAACTTGACACAACAGAAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgtagctaccttgaactgatttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgtatacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG