Sequence
atgc intronic sequence ATGC exonic sequenceTTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g10150.1 (Oryza sativa), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TGACCAATTTTATGTCGGACATTGCCGATGAATTCAAGATTGTTGTCGTAGAGGCCATAAGATCCTTGTGCTTGAAGTTCCCCCTAAAATATCGGTCACTgtacgtagaatagcgtatat--tcttatacagaaatttttaaagatccagaactagcttgtcatca---gaacattgaactttgttgtgtttgcag----------------------------------
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G178618_T01 (Zea mays), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TGACCAACTTTATGTCAGACATAGCTGATGAGTTTAAGATTGTTGTTGTTGAAGCAATAAGATCCCTGTGCTTGAAGTTCCCTCTGAAATATCGCTCATTgtatgta---------------------tatagaagcgtgtttgcactattcttgt------------taaacatcgtaaactacctttttcatctataa-gcattaattttcatttatctg--ttccag
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G036034_T01 (Zea mays), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TGACCAACTTTATGTCAGACATAGCTGATGAGTTTAAGATTGTTGTTGTTGAAGCAATAAGATCTCTGTGCTTGAAGTTCCCTCTGAAATATCGCTCATTgtatgta---------------------tatagaagcat----gtcttcttgcgctagtcttgttaaat----atcataaactacctttttcatctataa-gcattaatttccatttatctgttttag--
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G01520.1 (Glycine max), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgat-----atcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTTCCTTTAAAATATCGATCTCTgtatgtgtccctgaatatagtttttgactccccacatgccatatgtta-catcgtgcatatttatttcctagaggaatgttttatgatgat---ggtttgtattctgctattattttcag---------------
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacat-ttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTTCCTTTAAAATATCGATCTCTgtatgtgtccctgaatatagtttttgactccccatacgccttatgttgcatatttatttcctaaaggaatgttttatgctgatggtttgtattctgctat-tattttcag---------------------
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtg-atatcctgtttttgatgtcat---cattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCTTGAAATTCCCTTTAAAATATAGATCTCTgtgagtacaagtcattctataggtttctttccccccagaagttacatatttcatttgaatgtttttcctagatgaatggtctaaattactggtttcttttctgttattattttcag------------------
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtg-------atatcctgtttttgatgtcat--cattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTATGCTTGAAATTCCCTTTAAAATATAGATCTCTgtgagtatatgtcaatgtcattctataggtttctttcccccagaagttacatatttcatttgaatgtttttcctagatgaatggtctaaattactggtttcttttctgttattattttcag------------------
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 5'ss of exon 8
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatga------acagtgtaaaatgtttccgtcatgtgaaata-gaataaccctttttcccttgcttttcag
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TAACTAATTTTATGTCAGATATTGCTGATGAGTTCAAAATTGTGGTCGTGGACGCAATAAGATCGTTGTGTGTGAAATTCCCACTGAAATACAGATCCTTgtaagtaaa-----gttttagggtttgttatttgtagttttggtctcgagcatttctatttttttgaatgattaaatatgttatggtatctttttagcatttggcttatgattgatctatcaccttttcatttgtag
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S41_154V6.1 (Physcomitrella patens), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtt----tttgatgtcatcattaaaacatttg----ggttttatttt-tatgtctt---ttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcc-cttgcttttcag------------------------------
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TCACGAATTTCATGTCAGACATAGCTGATGAGTTCAAGATTGTGGTTGTGGAGGCCATCCGCTCTTTGTGTCTCAAGTTCCCTCAAAAATATCGCTCATTgtgagctccatgttgatacacctttatttctttacaatatcttctgcatggactacatgttatatgtcacggctcttaaaatgctagttgcttaagtcagaataatacttgcttgattgatgatactggtacttacgttctggcatgacgagcgtcctgctcctttttttcag
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S276_96V6.1 (Physcomitrella patens), 5'ss of exon 9
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
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TCACGAACTTCATGTCCGATATTGCTGATGAGTTCAAAATTGTGGTGGTGGAAGCCATCCGCTCTCTTTGTCTCAAGTTCCCTCAAAAGTATCGCGCATTgtgagt------ttcgcaaaaatataaacctataaacctattg--tgaatatataaacctattgtgaat--atattgtagaatgttctt----tgtgatat----ttccttcggttcc------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359101|gb|EC920028.1|EC920028EST: GAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTT GATGAACTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGCTTTGAGTACAA
genomic: GAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgata ... tgcttttcagGATGAACTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTgtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG