1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattttttctgcttttgtcaatgaatggtttgtgattgtctttccttataaaaaccaagataacttaaagactaattgcctttcaaaaattacac...
species | Vitis vinifera |
transcript | Vv03s0038g02760.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATEST: gi|110719306|gb|EE097131.1|EE097131
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTCGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATEST: gi|110712807|gb|EE088186.1|EE088186
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATEST: gi|33402634|gb|CF208261.1|CF208261
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCTGGAAGGCGTGGGTATCCTGGGTATEST: gi|110723346|gb|EE100552.1|EE100552
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATEST: gi|156737783|gb|EV241904.1|EV241904
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATEST: gi|71862037|gb|DT011092.1|DT011092
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCTGGAAGGCGTGGGTATCCTGGGTATEST: gi|34542425|gb|CF510657.1|CF510657
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCTGGAAGGCGTGGGTATCCTGGGTATEST: gi|27755418|gb|CB036173.1|CB036173
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGAAGGCGTGGGTATCCTGGGTATEST: gi|110424996|gb|EC991371.1|EC991371
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
EST: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
genomic: TTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattt ... gcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattttttctgcttttgtcaatgaatggtttgtgattgtctttccttataaaaaccaagataacttaaagactaattgcctttcaaaaattacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatt