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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTCTGCAGGGTCTAGTTCACAAAGCTCTTCTCGTCAGTCTCAGGGGAAGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgtttcatcagccattcagaactaaaatggtttttttttttttcaaaaaaagctgctattgatacaattctgctcattttggatggttctttactcctgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g00750.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390673|gb|EC955597.1|EC955597
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|30329064|gb|CD012326.1|CD012326
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110693293|gb|EE069397.1|EE069397
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|26257918|gb|CA808981.1|CA808981
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110427688|gb|EC994138.1|EC994138
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110373345|gb|EC937572.1|EC937572
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110372363|gb|EC936521.1|EC936521
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110416730|gb|EC982730.1|EC982730
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|27582452|gb|CB005147.1|CB005147
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110373059|gb|EC937266.1|EC937266
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|26263375|gb|CA814438.1|CA814438
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110401031|gb|EC967624.1|EC967624
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|51051607|gb|CO819141.1|CO819141
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110372159|gb|EC936308.1|EC936308
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110391465|gb|EC956442.1|EC956442
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|26263426|gb|CA814489.1|CA814489
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCGAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
EST: gi|110409595|gb|EC975261.1|EC975261
EST:     AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAG                         GAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG
genomic: AGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgt ... actcctgcagGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTTCTGCAGGGTCTAGTTCACAAAGCTCTTCTCGTCAGTCTCAGGGGAAGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGgtactgttgtttcatcagccattcagaactaaaatggtttttttttttttcaaaaaaagctgctattgatacaattctgctcattttggatggttctttactcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA