1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAGCACGCACGTAAAGTTCAAGATAGAGACTCCTTAAGTGAACAAGTAGTACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGgtagacatgcgttaagattcatgtcctatgtttcctgctagatgtttgttttggaaaatccataagactgctgccatgcttaaacccaagctaaaacttc...
species | Vitis vinifera |
transcript | Vv03s0017g01690.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACAACTTCAGAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAG AAGGAAACTCATTCTCAAAAAGAGTTGGAACATGAGGCAGCAGCAAAGCATEST: gi|110719386|gb|EE097299.1|EE097299
genomic: TACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGgtagacatgc ... aacaaaacagAAGGAAACTCATTCTCAAAAAGAGTTGGAACGTGAGGCAGCAGCAAAGCAT
EST: TACAACTTCAGAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAG AAGGAAACTCATTCTCAAAAAGAGTTGGAACATGAGGCAGCAGCAAAGCATEST: gi|110360042|gb|EC922576.1|EC922576
genomic: TACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGgtagacatgc ... aacaaaacagAAGGAAACTCATTCTCAAAAAGAGTTGGAACGTGAGGCAGCAGCAAAGCAT
EST: TACAACTTCAGAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAG AAGGAAACTCATTCTCAAAAAGAGTTGGAACATGAGGCAGCAGCAAAGCATEST: gi|110358649|gb|EC923021.1|EC923021
genomic: TACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGgtagacatgc ... aacaaaacagAAGGAAACTCATTCTCAAAAAGAGTTGGAACGTGAGGCAGCAGCAAAGCAT
EST: TACAACTTCAGAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAG AAGGAAACTCATTCTCAAAAAGAGTTGGAACATGAGGCAGCAGCAAAGCAT
genomic: TACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGgtagacatgc ... aacaaaacagAAGGAAACTCATTCTCAAAAAGAGTTGGAACGTGAGGCAGCAGCAAAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCACGCACGTAAAGTTCAAGATAGAGACTCCTTAAGTGAACAAGTAGTACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGgtagacatgcgttaagattcatgtcctatgtttcctgctagatgtttgttttggaaaatccataagactgctgccatgcttaaacccaagctaaaacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaaaa