1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGTAGATTTCTACCAAAGCTTAATAATGAACTCCCTGATGAGAGGAATTCAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATGgtgagttgaaagagctttttctcccttgctataactctcttagtcctcagattattgttctctttactcaatttatgcaggtttagctgttcaagaatatttatatttgccaccttatcatattggtttctcaacag
species | Vitis vinifera |
transcript | Vv02s0488g00020.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATG TTTGAGCAGGACACTGTTTTGATACCTAAAGAAACCTCCTGGTTTGGATATEST: gi|33401770|gb|CF207397.1|CF207397
genomic: CAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATGgtgagttgaa ... ttctcaacagTTTGAGCAGGACACTGTTTTGATACCTAAAGAAACCTCCTGGTTTGGATAT
EST: CAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATG TTTGAGCAGGACACTGTTTTGATACCTAAAGAAACCTCCTGGTTTGGATATEST: gi|110387835|gb|EC952533.1|EC952533
genomic: CAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATGgtgagttgaa ... ttctcaacagTTTGAGCAGGACACTGTTTTGATACCTAAAGAAACCTCCTGGTTTGGATAT
EST: CAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATG TTTGAGCAGGACACTGTTTTGATACCTAAAGAAACCTCCTGGTTTGGATAT
genomic: CAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATGgtgagttgaa ... ttctcaacagTTTGAGCAGGACACTGTTTTGATACCTAAAGAAACCTCCTGGTTTGGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAGATTTCTACCAAAGCTTAATAATGAACTCCCTGATGAGAGGAATTCAACTTACAAGGAACGTTTCAGTAGCTTAGAGAATTTGGTTCTTATCATGgtgagttgaaagagctttttctcccttgctataactctcttagtcctcagattattgttctctttactcaatttatgcaggtttagctgttcaagaatatttatatttgccaccttatcatattggtttctcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA