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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACCTATTGATCGGAGAACCTTTCTATTATGGAAATGAAGGCATGCTTCCATGGCAGAACCTGCGGTTTTGgtaaatagtacaatcattactcattttcaggatttcttgattttagcaatgaatttcaatttcagtagattactgagtaatagatgcattctcctcaagt...

Basic information

species Vitis vinifera
transcript Vv02s0154g00540.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G04600.1 (Glycine max), 5'ss of exon 10
GTTGACCTATTGATCGGAGAACCTTTCTATTATGGAAATGAAGGCATGCTTCCATGGCAGAACCTGCGGTTTTGgtaaatagtacaatcattactcattt---------tcaggatttcttgattttagcaat-gaatttcaatttcagtagattactgagtaatagatgcattctcctcaagt----------------------------------
||||| || ||||| | |||||||||||||   ||  |||| ||||||||||||||||||||||||||||||||||| ||     |||   | ||| |           |  |  |||||   |  || || | |   || |||     || | ||   | | ||| |||  ||   ||                                       
GTTGATCTGTTGATAGCAGAACCTTTCTATGTAGGGCATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTGgtatatttcttaatagctcctcttgcactgatcaatttgagtttctatgtcatatcagttgtgctttaataattataaagtatcaa-tgatatatgattttaacttggcacctaacattctcaagttacttttattcattttag

upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G15030.1 (Glycine max), 5'ss of exon 3
GTTGACCTATTGATCGGAGAACCTTTCTATTATGGAAATGAAGGCATGCTTCCATGGCAGAACCTGCGGTTTTGgtaaatagtacaatcattactc-----attttca----ggatttcttgattttagcaat-gaatttcaatttcagtagattactgagtaatagatgcattctcctcaagt-----------------------------------
||||| || ||| | | |||||||||||||   ||  |||| ||||||||||||||||||||||||||||||||||| ||    || | | |||||     ||  |||    |  |||||  ||  || || | |   || |||     || | ||   | | ||| ||| ||| |  |   |                                    
GTTGATCTGTTGTTAGCAGAACCTTTCTATGTAGGGCATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTGgtatatttcgcactaactactcttgcaatgatcaatttgactttctgcatcatatcagttgtgctttaatggttataaagtatcaa-tgatatatg-attttaatttggcacctaacattctcaagttacttttattcattttag