Sequence
atgc intronic sequence ATGC exonic sequenceGACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtattacccgtgcaactgcctttcgggttagagagttggtttggatgtgtgctactttgaggcaactacataatttgatttcactatatttttgtcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G178546_T01 (Zea mays), 5'ss of exon 9
-----------------------------GACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtattacccgtgcaactgcctttcgggttagagagttggtttggatgtgtgc-tactttgaggcaactacataatttgatttca---ctatatttttgtcag------------------------------------------------------------------------------------
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AGCTGTGGAGTTTTTACTTGAATCGCTTGGGCTCAGCGAGAGTGAAGATGTTCTCCCTATCTATGTTGGAGATGACAGAACAGATGAAGATGCATTCAAAgtatgtgtagttcgcttggatggatttcta-agggctagtttggaaacttaaatcccctccgggatttctagagattgagtgggattctagagattgagtgggaatcctggaggggatttcagattccaaactaaccctaaagcatatattttctacaacacataatttactcttggttcaaatag
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 9
GACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtatta---------cccgtgcaactgcctttcgggttagagagttggtttggatgtgtgctactttgaggcaactacataatttgatttcactatatttttgtcag------------------------------------------------
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GGTTAGCTGATAGGAATGATGTACTTCCCATTTACATCGGAGATGACAAAACTGATGAAGATGCATTCAAGgtattcaatttaagctgcgtaaaatagaattttcggttttttctttaatc-ggataggt-taattattatgctacaaactttgacgattgcattgaactttttttagaatccaagagaaatatattatacattgaactatgttaactatatatag
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S32_182V6.1 (Physcomitrella patens), 5'ss of exon 10
GACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtattacccgtgcaactgcctttcgggttagagagttggtttggatgtgtgctactttgaggcaactacataatttgatttcactatatttttgtcag---
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GGTTTCAAGATACAAATGATCTAATTCCACTATATCTTGGAGATGATAAGACTGATGAAGATGCATTCAAGgtaggcaccatctaccttccacctggtgtcttctattgttctttttctgcattgagatcattcttttg-gcaatgcttttcactcagaagttgaacatatg
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S141_116V6.1 (Physcomitrella patens), 5'ss of exon 9
GACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtattacccgtg-caactgcctttcgggttagagag--ttggtttggatg-tgtgctactttgaggcaactacat--aatttgatttcactatatttttgtcag
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GTTTTGCTGATTCAAGTGATGTTCTACCTGTGTATATTGGAGATGATCGAACAGATGAGGATGCCTTCAAGgtattaacagaaatgattgaattgatatctgcagaggttttgtttggttgctctgcaaaacttgggtagtgatgtttagttcaattctatcaacatcgtg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351033137|gb|FQ446490.1|FQ446490EST: TGCTCCCAATTTATATTGGAGATGATAGAACTGATGAAGATGCATTCAAG GTGTTGCGAGAAGGAAATCGGGGTTATGGTATACTGGTGTCTCCAGTACCA
genomic: TGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtattacccg ... tttttgtcagGTGTTGCGAGAAGGAAATCGGGGTTATGGTATACTGGTGTCTCCAGTACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGgtattacccgtgcaactgcctttcgggttagagagttggtttggatgtgtgctactttgaggcaactacataatttgatttcactatatttttgtcag
- - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG