Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtggtaatcatcttgcccttttcaaattttcaaggaagaacaaatcttggggaatgaagattcttgagcgaaaacctccatgttcaatcaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G42790.1 (Glycine max), 5'ss of exon 3
AGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtggtaatcatcttgcccttttcaaattttcaaggaagaacaaatcttggggaatgaagattcttgagcgaaaacctccatgttcaatcaca---------
|| | || ||||| ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||||||| ||||||||||||||||| || || ||| | | || | | | ||| || ||| | | | || || || || | | | | ||| |
GGGTTTAGCGACTCCAACTGCTGTTATGGTTGGGACCGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGCCAAGCATTAGAGAGTGCACATAAGgtcagcatttg-----catttcacatttgttagccactt---gaattttggat-ttgcttagtctatgttggtgggcttaatattgaacggttaataaagttgcaagaa
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G01680.1 (Glycine max), 5'ss of exon 5
AGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtggtaatcatcttgcc---cttttcaaattttcaa--ggaagaacaaatcttgg-ggaatgaagattcttgagcgaaaacctccatgttcaatcaca-----------------------------------------------------------------------------------
||| | ||||| || |||||||||||||||||||| || || ||||| ||||||||| | || |||||||| |||||||||||||||| ||||||||||||||| || || || | | | || | ||||| | | |||| |||| | || || || ||| | ||| || ||
AGGTTTAGCAACGCCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGgtcagcatttgacaactaacatatatagctccttaaattcaggatttgctttgtaaatgttggtgaaactaacatggactagcttagcttgtcataggcacacaacttaccttttgtgcttatgaaagaaaagttgtatgtatatacacacacaacatttgaatctgtttatggtggtttgtcttgtag
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G32190.1 (Glycine max), 5'ss of exon 4
AGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtggtaatcatcttgcc---cttttcaaattttcaa--ggaagaacaaatcttgg-ggaatgaagattcttgagcgaaaacctccatgttcaatcaca-----------------------------------------------------------------------------------
||| | ||||| || |||||||||||||||||||| || || ||||| ||||||||| | || |||||||| |||||||||||||||| | ||||||||||||| || || || | | | || | ||||| | | |||| |||| | || || || ||| | ||| || ||
AGGTTTAGCAACGCCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATACACATAAGgtcagcatttgacaactaacatatatagctccttaaattcaggatttgctttgtaaatgttggtgaaactaacatggactagcttagcttgtcataggcacacaacttaccttttgtgcttatgaaagaaaagttgtatgtatatacacacacaacatttgaatctgtttgtggtggtttgtcttgtag
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 3
AGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtgg---taatcatcttgcccttttcaaattttcaaggaagaacaaatcttggggaatgaagattcttgagcgaaaacctccatgttcaatcaca
|||||| || |||||||| ||||||||||| || || || |||||||| | || || || | |||||||| || ||||||||||||| |||||| |||||||||| |||| ||| ||| || | | ||| || | | | || | | | | | | || | | | | | | ||
AGGCCTAGCCACTCCTACGGCTGTTATGGTCGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGgtcagtaagtggcgttaaacattaactgctctataggtttcatttatagtagagaaattagaacaagtacacttttttgttacatggtgaaattcatatt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728350|gb|EE103842.1|EE103842EST: ATTAGAAAGTGCACATAAG GTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCT
genomic: ATTAGAAAGTGCACATAAGgtcagtatgt ... gattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtggtaatcatcttgcccttttcaaattttcaaggaagaacaaatcttggggaatgaagattcttgagcgaaaacctccatgttcaatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccat