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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGgtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatttatcattcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03370.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 10
ATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGgtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatttatcattcag
|| | ||| ||||| ||||| ||||| || || || || ||||||||||||||||||||||||||  || |||   || |||   | || || | || |  |    ||    | | ||    | | | | ||  || ||  |  ||
ATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagtatgatttct-ttgttgagttttttgtaattgatgcttttgatgtaatattgtt---tgtgtcactgttttgattgtctag

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 7
ATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGgtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctt-tctagtaacatatttg--attgaatttatcattcag
|| | ||| ||||| ||||| ||||| || || || || ||||||||||||||||||||||||||  || |||   || ||    ||    |   |||| ||||   |  |  | || ||   | | ||  | ||  || ||  |  ||
ATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagtatgatttct-ttgttaacttgcatttttttgttattgatgcttttgatataatattgtttgtgtcactgctttgattgtctag

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 7
ATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGgtcagcctggttttcat-----ttttgtactgttggtcactgtt--cttgacaatcctttctagtaacatatttgattgaatttatcattcag
|| |  ||    |||||||| || || || || || || ||||||||||||||||||||||||||  || |||  |      ||    ||| || ||  | | |   ||| |  |  | | |  | |  | | | | ||  |  || |   ||
ATAAGCGGGTCCTCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagaatgatttctacatccattcaacactttttgttgcagatgctttgtctgtagtatattcttatctttgtcactgcctcaattacatag

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGgtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatt-tgattgaatttatcattcag
|||||||  |||||| |||| ||||| || ||||||||||| || ||||||||||||||||||||  || |  |      ||| |||||  ||| ||||   ||||  | ||  |  | |    || | ||     ||    |||||
ATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGgtcagtatgctgctacaacctgt-ctgtt--tcaatgtt---gacaggcgtta-tgctgatgctttattatcttgcttggatttcag