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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagtgtggttattttgttaatactggttttcaattttacatcttctaagtttttcttgctaattttaatttgcag

Basic information

species Vitis vinifera
transcript Vv02s0012g00870.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 5'ss of exon 11
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactca--agtgtggttattttgttaatactggttttcaattttacatcttctaagtttttcttgctaattttaatttgcag
|||| |  |||||||| |||||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | || ||||| || || |||||    |  ||  |     | |||  | |    || |||  |||    | ||   ||  |  | ||||  | ||    |||||
GTCCAACTCATGTTTTAGTTGTTCGTGGTCTGGATGAAAATGCTGACGAGGAAATGCTTCGATATGAATTTGCCAAGCATGCACCTATAAAGgtgggaagaagcttatgactcttgaaatttgcagtgttccgtttc---tgttgagagaatgacatgctgttgttg---tgcag

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G173777_T01 (Zea mays), 5'ss of exon 10
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagtgtggttattttgttaatactggttttcaatttt---acatcttctaagtt-tttcttgctaattttaatttgcag
|||| |  |||||||| |||||||| || |||||||||||||||||||||||||||||||| || |||||| |||| || || ||||| |||||   |||       || ||  || |   |  ||||   |||    |||  ||  | ||| |||||  | |              
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCAATAAAGgtgggcaataa--actaattgcttgaggtttattttatttttctggacacgttacatgttatttctcaccag-------------

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G151614_T03 (Zea mays), 5'ss of exon 11
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagtgtggttattttgttaatactggttttcaattttacatcttctaagtttttcttgctaattttaatttgcag
|||| |  |||||||| |||||||| || || ||||||||||||||||||||||||||||| || |||||| |||| || || ||| | |||||    ||       || ||  || || | | || ||   |||   |  |  |    || | ||  | || |     |   
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTAGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCATTAAAGgtggggaataa--actaattgcttgattcggtttctcttgttt---ttctggacacattacatgtaatttctcgccag---

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgt---act-caagtgtggttattttgttaatactggttttcaattt-tacatctt-----ctaagtttttcttgctaatttt--aatttgcag---------------------------
|||| |  ||||| |||||||| || || |||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| || |||||   | | | |||   | || ||  ||||| ||  |  |   ||| | |||        |   ||| |||||| | || ||  |||||  |                            
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgt------actcaagtgt--ggttattttgttaatactggt-tttcaattttacatct-----tctaagtttttcttgctaatttta--atttgcag---------------------------
|||| |  |||||  | ||||| || || ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||||      ||| || |||   | || ||   |||| ||  |  |     | | |||        |   ||| |||||| | || ||   ||||  |                            
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaag------tgtggttattttgttaatactggttttcaattttacatctt--ctaa---gtttttcttgctaattttaatttgcag
|||| |  |||||  ||||||| || || ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||   |||       | ||| |   ||||  ||   | | ||  | |||| || |    | |   | ||||| |  |      | |||| ||
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352774159|gb|FQ474682.1|FQ474682
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
EST: gi|352772792|gb|FQ473830.1|FQ473830
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
EST: gi|352764157|gb|FQ467727.1|FQ467727
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
EST: gi|28962295|gb|CB341328.1|CB341328
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA