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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgtaagaccgaccccaattaatctgtgagtggcttgactggtttgataatagcaatcggttgttaacttccaaaaaaacattttttccccaag

Basic information

species Vitis vinifera
transcript Vv01s0150g00390.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 5'ss of exon 10
GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgtaag--accgacc-ccaattaatctgtgagtggcttgactggtttgataatagcaatcggttgttaacttccaaaaaaacattttttccccaag
| || ||||| || |||||  | || || ||| | ||| ||||||| || |||||||| ||| | ||||||||||||||||| ||||| || ||| | |||||||  |  | |   || ||      |   |   || | || |    |||   ||||   |  ||| ||   |||  |||    | |     ||
GGGGGCAAGAGAAGAATGTCAAGGGAAAGCATCGCTTGAGAGGAGATATCAATGTACTCCTCTTAGGTGATCCAGGCACTGCAAAATCCCAATTTCTCAAgtaaggaataggcaatcagtttcatcatctctctttttattgctccattaact-caatatttcattatctaaaaaattaactcactgttttgtag

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G139894_T02 (Zea mays), 5'ss of exon 10
GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgtaag-accgaccccaattaatctgtgagtggcttgactggtttgataatagcaatcggttgttaacttccaaaaaaacattttttccccaag
| || ||||| || |||||  | || |||||| |  || |||| ||||| ||||| || ||||| ||||||||||||||||| |||||||||||| | ||||||| || ||     | | || | | |||  |||||  | | ||  |||| |      |||  | ||| ||                     
GTGGACAAGAGAAGAATGTGAAGGGAAAACATCGCCTGAGAGGCGACATCAATGTCCTCCTCCTGGGTGATCCAGGCACTGCAAAATCACAGTTTCTTAAgtaaggactgatt---aatcatttttcagttccttgag-gatgtgccaataac------ttgccatcttgcag--------------------

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G32890.1 (Glycine max), 5'ss of exon 9
GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgta-agaccgaccccaattaatctgtgagtggcttgactggtttgataatagcaatcggttg-ttaacttccaaaaaaacattttttccccaag
    |       |  ||   ||||| || ||||| ||| |||||||||||||||| ||||| |||||||||| ||| ||  | || || || ||| | ||||  ||    | ||   ||| | ||| | |  |||   |    | |||||    ||  ||   ||||     |    || || |  | |  |||
----CTTTAGCTATGATAAGGAAGGAAATCATAGATTGAGAGGAGACATAAATGTTCTTCTTCTTGGTGATCTAGGAACAACAAAGTCTCAATTTCTTAAgtgtagcttcatccatcttattttgtaaatatcttctttccacttataattatgataagtaaattaataaatattttaaaatctactac--aag

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 8
GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgtaagaccgaccccaattaatctgtgagtggcttgactggtttgataatagcaatcggttgttaacttccaaaaaaacattttttccccaag
| |||||||| |||||| |  |||||||||| || ||||| ||||| || ||||||||| | || ||||||||||| || || |||||||| ||| | ||||||||        || ||  |||  |   |||| |||   || |||       | |  | ||  | |  |    |  | | ||||  | ||
GTGGCCAAGAGAAAAATATCAAAGGGAAACACAGATTGCGTGGAGATATTAATGTACTTTTACTAGGTGATCCAGGAACAGCAAAATCACAATTTCTGAAgtaagaa-------aactatcctg--accagctt-acttaattaatatctttggt-gaatattttcattaactgcattaatgtttcttctag