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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCAGGGTGTCAAGACTGCCACCTCCATACCAGGACTTAGCTCCCCTTCTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactcgtctttctttctttctacagaaaaagaaaaaaagggaagaaaatgaaatgatgacatgtaacagaaaaaaaacgagcagcttatgttttgaatattttgttgcag

Basic information

species Vitis vinifera
transcript Vv01s0146g00120.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G52160.1 (Glycine max), 5'ss of exon 10
TATTCAGGGTGTCAAGACTGCCACCTCCATACCAGGACTTAGCTCCCCTTCTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactcgtctttctttctttctacagaaaaagaaaaaaagggaagaaaatgaaatgatgacatgtaacagaaaaaaaacgagcagcttatgttttgaat-attttgttgcag
| ||    |||||||||  |     ||| || | ||| || ||||| ||| | |||||||||||  | ||||||||||| |||||||| ||||||||||||| |||     |  | | | | | ||    || ||||   |  ||||   ||| |  |    || ||  | ||  | |   |    |||     |||||| ||  ||| | ||
TTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTGCTAACCGTGTTATGTGGGGCAGgtaacttcctatcatatatgttttca----aataaaatgggaaaagagggtgagacaactttatttataacaatcatattaa----ctt---ccttgaatcatgctgtggaag

upper sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G52130.1 (Glycine max), 5'ss of exon 9
-TATTCAGGGTGTCAAGACTGCCACCTCCATACCAGGACTTAGCTCCCCTTCTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactcgtctttctttctttctacagaaaaagaaaaaaagggaagaaaatgaaatgatgacatgtaacaga-----aaaaaaacgagcagcttatgttttgaatattttgttgcag-------------------------------------------------------------------------------
 | ||||| |||||||||   |    ||| || |  || ||  |||| ||  ||||||||||||| ||   ||||||||| |||||||| ||||||||||||| |||     |  |   | | | |||  ||         || | |  ||  |||   ||| |  ||  |       |   |||  || |    |  || ||| ||    || | |                                                                                
CTTTTCAGAGTGTCAAGAGCACAGTTTCCTTATCTAGATTTGTCTCCTCTCTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCAggtaacttccaatcatacatgtgttcagctaatttttttttggaaggccaaccaaaatttgataaatatgatgtgttcagctaaaatagaactcaactttgtgagtaaacagtagaatagggaaaggggtaagagaatcttatccataaacaaccaaattaactttttctttttccttttcccaccatgctgctaca

upper sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G10680.1 (Glycine max), 5'ss of exon 12
TATTCAGGGTGTCAAGACTGCCACCTCCATACCAGGACTTAGCTCCCCTTCTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactc---gtctttctttctttctacagaaaaagaaaaaaa------gggaagaaaatgaaatgatgacatg--taacagaa-------aaaaaacgagcagcttatgttttgaat--attttgttgcag--------------
| ||||| |||||||||   |    ||| || | ||| ||  |||| ||  | ||||||||||| ||   ||||||||| |||||||| ||||||||||||| |||     || | | |   |||  |  | | ||||   ||      | | | | | |  |||   || | |  ||| ||||        | |||| | ||  | |  ||||       || | || ||               
TTTTCAGAGTGTCAAGAGCACAGTTTCCTTATCTGGATTTGTCTCCTCTCTTATCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTGATGTGGGGCAGgtaacttccaatcatacatgtgttcagctaagatagaactcaactttgtgaggaaacagtagaatagggaaaggggtaagagaatcttatccataaacaaccaaatcaactttttgcccccttcttttccaaccgtgctgctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110382591|gb|EC946898.1|EC946898
EST:     CTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAG                         TGACTTCCCATTTGTTGTTCCTGAATGCGGATATAAAGGAGCAAAAGAATC
genomic: CTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactcgtc ... tttgttgcagTGACTTCCCATTTGTTGTTCCTGAATGCGGATATAAAGGAGCAAAAGAATC
EST: gi|110367255|gb|EC931182.1|EC931182
EST:     CTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAG                         TGACTTCCCATTTGTTGTTCCTGAATGCGGATATAAAGGAGCAAAAGAATC
genomic: CTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactcgtc ... tttgttgcagTGACTTCCCATTTGTTGTTCCTGAATGCGGATATAAAGGAGCAAAAGAATC