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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaataccttttatattgttatctgatttgaaaaaaagaaactatattattgtggaacatggtcaacacttatatctgttttcaatgcttatcctggc...

Basic information

species Vitis vinifera
transcript Vv01s0026g01700.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418753|gb|EC984927.1|EC984927
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|110693432|gb|EE069656.1|EE069656
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|161717886|gb|FC065984.1|FC065984
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACC
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACC
EST: gi|110379389|gb|EC944580.1|EC944580
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|46910317|gb|CN545692.1|CN545692
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|71884005|gb|DT033060.1|DT033060
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTG
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTG
EST: gi|71884658|gb|DT033713.1|DT033713
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|110722964|gb|EE099738.1|EE099738
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCCG                         AATTTTGCAATTGAGGGTGTGGTGTACCTGTGCAATGCTGTTAAAGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|110396076|gb|EC961751.1|EC961751
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|110361687|gb|EC925180.1|EC925180
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|22011799|gb|BQ796833.1|BQ796833
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: gi|110713393|gb|EE089276.1|EE089276
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAAGGTGTGGTGTACCTGTGCAATGCTGTTA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTA
EST: gi|46918277|gb|CN547606.1|CN547606
EST:     GATGGGAAGATAGGTTCATTGGAATATAAGCAG                         AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaataccttttatattgttatctgatttgaaaaaaagaaactatattattgtggaacatggtcaacacttatatctgttttcaatgcttatcctggc

- - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacta