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GTCGATTTTTGATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagtaggcctcttagttggttctttattgctgagtatatatttttttttttggaatatttttttggaatctggtggataccttaacttttgttcaatgttatttttaaag
species | Vitis vinifera |
transcript | Vv01s0011g05370.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|161709381|gb|FC059250.1|FC059250
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: ATCACCAAAATTCACATTCTG TTATGATGCACTGCATTGGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTEST: gi|30305224|gb|CB982018.1|CB982018
genomic: ATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCA-T-GGAGTTGGTGGAGCTTATGCAAAGCGAATATTT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|351015349|gb|FQ445633.1|FQ445633
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCCGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|32270931|gb|CD720090.1|CD720090
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: ATTTCCNATCTATCCAAAAGCTGCTCTCATCACNCAAA-TTCACATTCTG TTATGATGCACTGCATEST: gi|30125147|gb|CB910486.1|CB910486
genomic: ATTTCCAATCTATCCAAAAGCTGCTCTCATCAC-CAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCAT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|30136409|gb|CB921747.1|CB921747
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|30305289|gb|CB982083.1|CB982083
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|30125386|gb|CB910725.1|CB910725
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|349810189|gb|FQ401635.1|FQ401635
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|349818554|gb|FQ403189.1|FQ403189
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|349827300|gb|FQ421573.1|FQ421573
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|349810979|gb|FQ405967.1|FQ405967
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|349810186|gb|FQ401632.1|FQ401632
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGTEST: gi|161715091|gb|FC063627.1|FC063627
genomic: GATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
EST: AGCTGCTCTCATCACCAAAATTCACATTCTG TTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
genomic: AGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagta ... atttttaaagTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGAATATTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGATTTTTGATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagtaggcctcttagttggttctttattgctgagtatatatttttttttttggaatatttttttggaatctggtggataccttaacttttgttcaatgttatttttaaag
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - GCTGCT